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13-5764-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3752438 [Map]; Strand: c
      • AT1G11190.1 - [+] show detail - bifunctional nuclease i
        Distance: 0; Region: intron1 (CDS)
      • AT1G11200.1 - [+] show detail - Protein of unknown function (DUF300)
        Distance: -927; Region: promoter
    Flanking Genome Sequence: 13-5764-1 - 5-prime edge 
    GTATTAGTGA GATATACCTA CAAATTTTTA ATTAGGATTG ACTTTTAAAT 
    TGCTATACGT TACCATGCCT AACATCTCAT GTAGATGATC ATGAATACAA 
    ACATGTCTAA TGGCATATCA AATTCCAAGT TTTTTTGGTA GAGATCTGAG 
    TCATTTGACC GTTATAAGAT TCATAACAAA AGTTCGTATG TGTGTGTTTT 
    TGTGGTGTGA CCAGAATCTT TTAGAAGCCG GACCAGCACA TGTAGTAGAG 
    AATCTGTTAC CGGATTACGT GAAAGGAGAT TTATCAGCAT TGTGTGTGTG 
    GCCTGACCAG ATCCGACATT GGTACAAGTA TCGTTGGACC AGCCATCTCC 
    ATTACATCGA CACTCCCGAC CAAGCCTGCT CTTACGAATA CTCTAGTAAG 
    TCACAACCGA GACATTTTCA GATAACCTTA ATCCGTTTTC TAATTATCTT 
    GAACCGGAGT TAACCAAAAA ATCAATTACA AATACCAAAC CGGATTAAAA 
    ACAGGGGATT GTCATGATCA ACATGGATTG AAGGATATGT GTGTGGATGG 
    AGCAATCCAG AATTTCACGT CTCAGCTTCA GCATTACGGT GAAGGAACAT 
    CTGATCGTAN ATGTATGTCA TCATTTTCAT TTATTTCATA TAATGATGAT 
    ATCCAAAGTG TAACTGCGTA TTTT

AT1G11190.1

Model type
Protein coding
Short Description
bifunctional nuclease i
Curator Summary
Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).
Computational Description
bifunctional nuclease i (BFN1); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, endoribonuclease activity, producing 5'-phosphomonoesters, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: endonuclease 4 (TAIR:AT4G21585.1); Has 701 Blast hits to 698 proteins in 200 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 98; Plants - 121; Viruses - 4; Other Eukaryotes - 291 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11200.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF300)
Computational Description
Protein of unknown function (DUF300); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT4G21570.1); Has 839 Blast hits to 837 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 195; Plants - 241; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
Link
InterPro Scan - TAIR