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13-5765-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22374952 [Map]; Strand: c
      • AT3G60530.1 - [+] show detail - GATA transcription factor 4
        Distance: 565; Region: intergenic
      • AT3G60540.1 - [+] show detail - Preprotein translocase Sec, Sec61-beta subunit protein
        Distance: 11; Region: intergenic
    Flanking Genome Sequence: 13-5765-1 - 5-prime edge 
    GTCTCAATTG ACCTCAACAT TTTTGCAGTT TCTTGATATT TGAAGTTTTG 
    TCTTTCTTTA TACATATATT TGATCCTCTT TTTTCTTGGC TTGGTTTAGT 
    TGATAGTTTA AGCGGAAAAT TAACCAAATT AGATTAGTTT TGTATGGTAT 
    TTCTGGTTCG ATATCTTAAT GTTAAGACCT TGCTTTGGTT TCTATTAGGA 
    TTCGGTCTGT CGGGGTTCTG GATTTGAATA ACGGTGACAC TATACACCAC 
    ATTATGGTTC AATTTTCAGA TCATATGTTT GTTCTGTTTC GGTGTTACCG 
    CCTAACCAGT TTAGTTTATT TATAAGAGGT TTAAGCACTT TGTATAAGAG 
    TATTGGTAAT TTTTGGTTCA GATGGAATAA AGCGAAAAAT TGTTAGATTT 
    GAATAGCCTA AACCAGAGAG AGTTAGGTTT GGTATGGCTT AGGTTACTAT 
    TTTTTAAGAA AGTAGTAAAC TGAATTGCCT CGTGAAATGC CAAAAACTCA 
    AACTCTCAAG CATGTAACAT GTATGATGTA TGTATGAAGA TTAACCANCA 
    TTGNCATGTG TGATATAACA TCATAAGTCA CAAAAAGAAN ANNCCATGGN 
    GGNNGANAAG CTNNANNNNN GNCCNNNNNC CNNNCNNNCC CC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22375068 [Map]; Strand: c
      • AT3G60540.1 - [+] show detail - Preprotein translocase Sec, Sec61-beta subunit protein
        Distance: 0; Region: exon2 (3UTR)
      • AT3G60540.2 - [+] show detail - Preprotein translocase Sec, Sec61-beta subunit protein
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 13-5765-1 - 3-prime edge 
    ATTGAGACTA CTCAAGAAAA CAACAACAAA ACTCAAAACA TGAATGAAAC 
    TACTATACTG ACAAAATTCT AAACAGTGAA AAAGGGTACG ATGACATTGC 
    TCTGTATGTA TCGTCTTCAT TTGCTCTTGA CAAAATAGAG CTTACCCATG 
    ACATGAAGAA CAGCTACAAA AGCAATGAAA CCAATGCTCA TGATAAGAAC 
    AACATTTGGA GATATCTTGA GACCAGGCGC GTCGTCTGTG TAGAACTGAA 
    GCATTGTTCC AGCTGCTCCT CCACCAGCTC CACCACCGGC GCTGCTGCTG 
    CCACCAGCAG GCTTCCTCCT CCTCATGCTT GCAGTTGCAG CTGCACTTCC 
    TCTCTGTGGA GCTCCACCAC CAACCATTTT TGCTTCACTT CTTGTTTTTC 
    AACTAAGTCA ATAACAACAC AAACTTAAGA AAGAATGAAG TAGAATCTCA 
    AATGTTTATA AAACCATAGA GAACAAAGAT GAAATCTATG AACAATTTGG 
    CTTAATAACA GTGTAATAAT TCTTGATAAT CTGATCCATA TTGTCCAAAA 
    ATCAAGATTC ATCATCACAA CCGAAAAAAG AAGCAACATT GGGCATGCAG 
    ATCAATAAAG CGTGTCATAA TCGGACAAGT CCAAATGTTA CGCTAGCGAA 
    ATCAACATCT AGAATT

AT3G60530.1

Model type
Protein coding
Short Description
GATA transcription factor 4
Curator Summary
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational Description
GATA transcription factor 4 (GATA4); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 2 (TAIR:AT2G45050.1); Has 1515 Blast hits to 1478 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 592; Plants - 818; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60540.1

Model type
Protein coding
Short Description
Preprotein translocase Sec, Sec61-beta subunit protein
Computational Description
Preprotein translocase Sec, Sec61-beta subunit protein; CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: Preprotein translocase Sec, Sec61-beta subunit protein (TAIR:AT2G45070.4); Has 393 Blast hits to 393 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 114; Plants - 109; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60540.2

Model type
Protein coding
Short Description
Preprotein translocase Sec, Sec61-beta subunit protein
Computational Description
Preprotein translocase Sec, Sec61-beta subunit protein; CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: Preprotein translocase Sec, Sec61-beta subunit protein (TAIR:AT2G45070.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR