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13-5818-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18063465 [Map]; Strand: w
      • AT4G38650.1 - [+] show detail - Glycosyl hydrolase family 10 protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-5818-1 - 5-prime edge 
    CTTNGAAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CACAAGTATA TTATAGCATA CCATAGTATA 
    TAACATACAT GTATACAGAA TTTTAGCTTG ATATATGATG TTTTTACTCT 
    TCAGGTATAG ATGGACCTTT CTACGACTCT ACTGCCTACA CAGAGGTTTT 
    TAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18063462 [Map]; Strand: w
      • AT4G38650.1 - [+] show detail - Glycosyl hydrolase family 10 protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-5818-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCTG 
    TGTACCATTT GACGAAGAAG CAAGAGTGAA GGCGGTGAGG AGAGAAAGGG 
    CCAAGAGGAT CACCAGCCCG NGCCNTANAC CTANTCATTN CCNTANCAAG 
    AACACAAAAT CCTGCGATAG GAAAAGAAAA AAAGAGAGAA ATCAAGGGGA 
    TGAAACCAAG TGCCTTGATG CGGTTGGATA GGTGGTTAGG CCATTCTCTA 
    TTTGGGAGAG TTTCATTCAG AGAGGGAACA ATATGTCAGA AACACTGAAC 
    CTATTGAGTG AGTTCACGTG ATGATGTTGT TATATGCGAA GTGTTTTTTT 
    TTGTCATGTG AAGTTGTGCT TTTATNTAAA TACTACCCCT ATTANAGTAC 
    CACGGGTTGA TGCATGCTTT GGCTACAAAG TTTNTTACNC TAAATCTTAC 
    CTTTTCCCTT NTTNTGTNTT TTGTGTGTGT TTGTNTNTGC AAAANNCTTT 
    TTACGCNTTG NNGTGGGNAG TTCTCNCTNC TACNGACCGN GATNTNTTTT 
    TTTTTGGNGT GANTGCTTTT TTTCTGATAA NNNAANATNA GNNGNATTTN 
    GNGTTNTTNC NTTNTTTTTT ATTTANNNNT TTTNAGNNTT TTNAANANNT 
    TNGANNTGNN CCTTNTTTNT TTCTTTTTNN NATNAATNNA TATNTATCAC 
    NNTTTTCGNG TCGTTANNNC NCNNNTNTNT TNNTTTTNAC TTTNTNTNTN 
    NATNTNTTNG ANNNANAATN TATAGANNGA ANCNNTTTNT NTTTTATNTT 
    TNAATNNCTC TCT

AT4G38650.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 10 protein
Computational Description
Glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein (TAIR:AT4G38300.1); Has 2063 Blast hits to 2053 proteins in 438 species: Archae - 10; Bacteria - 1176; Metazoa - 20; Fungi - 357; Plants - 277; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR