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Mutant Lines
13-5857-1

13-5857-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 23166252 [Map]; Strand: c
- AT1G62560.1 - [+] show detail - flavin-monooxygenase glucosinolate S-oxygenase 3
  Distance: 3603; Region: intergenic
- AT1G62570.1 - [+] show detail - flavin-monooxygenase glucosinolate S-oxygenase 4
  Distance: -2884; Region: intergenic

GGGNNAAACT AACAAAATCC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCCT TCAACACAAC TAATGTAAAA TAATCCATAC 
GTTTTACGAT TCTAGTATTT TCACCAATAA CAAATTTGAA AGAGTAGTTA 
TGAAAATGAA CCAAGTAACT CGTGTTTCAT GTGTTATCAT AAGGGCAATT 
TTCCTAGGCC TCTTAAAGTT TTAATAAATT AAGGGCAATA TTTATATACT 
TTCAGATTTT TTTTTTTAAT AGTTAATANA AATNCANCAN NACCCGGGCT 
TNNNGNGTTN CCGGGCNCCN NGNGTTNTCC AAAGTAATCA NCGTAGTNGC 
NNGACTNTCC AAAATTAANG TAANGCTTCN NGNGTTCTAC GTTAANGGCC 
NCGTAAAACT TANTAAATTN AGGGCCNCNT TTNTNTNTAA ATNAAATTNC 
TTCAGTNAAT TAATTNCCTT TNACTTNTNA ANCNCTNTNT TAAATGGCAT 
CATNAAATCT TNGGTTAGNG GNNCATNAAA AAAATTNTTN CAAAAGGGNT 
NNGNAGGTTT TNCTTTTTGG NAATNNCTTT AAANCCAAAG GATNTNTTTA 
ATNTTAACAT NCAGCAAACT NTTNNGCCCC CNANANAAAT GGNTTTTCCT 
NTTTTTANGG GGNAAAAANN AGGGNNNATN AAACTNGCAA AAANTTTNCT 
TTAAAANTNT AANGNGNGTN TTNNAATTNN GACCCNNNAT NGGNTTNANG 
ANGNGANGGN GGAA

3 prime edge [+] show sequence

Chromosome: 1; Position: 133524 [Map]; Strand: w
- AT1G01340.1 - [+] show detail - cyclic nucleotide gated channel 10
  Distance: 0; Region: exon5 (CDS)
- AT1G01340.2 - [+] show detail - cyclic nucleotide gated channel 10
  Distance: 0; Region: exon7 (CDS)

ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTGCNGANN TATTTGGTAG 
TCNACAACAG NTTCGAGCAA GAGGAAATGA NGGTGAGAAA GAGAGATGCA 
GANCATGTGG ATGTCTCATA TAATGTNNCC TGAANACCTG AGGAAACGTA 
TCACGAAGAT NTGANCNNTA TNTATGGCAA GAGACAAGAG GANTTGAANA 
NNAAACCCTN CTTCGTNACC TCCCTAAAGA CCTCAGANGA GATATTAAAC 
GCCATCTTTG CCTCGATCTN CTCAAGAAAG TGNGTNACAN GCTTTGACGG 
NTTANCCAAA GTCCATATGA GTCTTTATCT TTGTATCTTT TAACAAGGAA 
ACACTACTTA GGCTTTTAGG ATAAGGTNGC GGTTTAAGTT CTTATACTCA 
ATNATACACA TGACATCNNN TCATATTCGA CTNTAANACA CTAACCAANC 
T

AT1G01340.1

Model type: Protein coding
Short Description: cyclic nucleotide gated channel 10
Curator Summary: member of Cyclic nucleotide gated channel family
Computational Description: cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1); Has 3364 Blast hits to 3209 proteins in 253 species: Archae - 0; Bacteria - 35; Metazoa - 1554; Fungi - 48; Plants - 1027; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01340.2

Model type: Protein coding
Short Description: cyclic nucleotide gated channel 10
Curator Summary: member of Cyclic nucleotide gated channel family
Computational Description: cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Ion transport (InterPro:IPR005821), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1).
Link: InterPro Scan - TAIR

AT1G62560.1

Model type: Protein coding
Short Description: flavin-monooxygenase glucosinolate S-oxygenase 3
Curator Summary: belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates
Computational Description: flavin-monooxygenase glucosinolate S-oxygenase 3 (FMO GS-OX3); CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: flavin-monooxygenase glucosinolate S-oxygenase 2 (TAIR:AT1G62540.1); Has 15604 Blast hits to 15117 proteins in 1989 species: Archae - 85; Bacteria - 8709; Metazoa - 1148; Fungi - 1456; Plants - 809; Viruses - 0; Other Eukaryotes - 3397 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G62570.1

Model type: Protein coding
Short Description: flavin-monooxygenase glucosinolate S-oxygenase 4
Curator Summary: belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates
Computational Description: flavin-monooxygenase glucosinolate S-oxygenase 4 (FMO GS-OX4); CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: flavin-monooxygenase glucosinolate S-oxygenase 2 (TAIR:AT1G62540.1); Has 12978 Blast hits to 12465 proteins in 1535 species: Archae - 27; Bacteria - 6311; Metazoa - 1188; Fungi - 1455; Plants - 842; Viruses - 0; Other Eukaryotes - 3155 (source: NCBI BLink).
Link: InterPro Scan - TAIR