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13-5941-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1415286 [Map]; Strand: w
      • AT4G03210.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: -663; Region: promoter
      • AT4G03210.2 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: -667; Region: promoter
    Flanking Genome Sequence: 13-5941-1 - 5-prime edge 
    CCGGATATAC ACACACACAC ACACACACAA ATAATACGTG GGTGTTGTTA 
    TTATGGCTTA CCTTACACAA CACAACNTGC CANTGTTTNT AAATTTACCA 
    AAAACCAAAG CCAGAANATA TTTTATTGCC ACAAATTGAC GTCACACCTG 
    CCNATATNTA ATCNNTGTGT GCNACACAAA AAACAAAAAA TTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1415176 [Map]; Strand: w
      • AT4G03210.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: -773; Region: promoter
      • AT4G03210.2 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: -777; Region: promoter
    Flanking Genome Sequence: 13-5941-1 - 3-prime edge 
    GTATCCGGGG ACTAAATTGT TTCTTTGTCC CCATTGGACG ACATCGAAGA 
    AAAAATATCA CGGGCGTTTC TTGTATCAAG ACAAATGAGA CAGTGACGTT 
    TACTTAATCC GAAATTGTTT AACCTAACAC AAGTCCCACC TGGTTGAAAC 
    TTGGAAACGA TTTTTATACT AAACCAAATC ATCAGATTCA ATGTTATCAC 
    TCTATTTGAG TGTTGTTGTG TTCTGTCTAG TGAACAGTTA CCGAGCAAGT 
    GGCATGCGTG CGTGCACCGA GAGGCTCGGC TATTTGAGCC AACGGCTCTT 
    ATTTTTACTG TGTCAGTAAA AAAAATTAAA AGTTAATTAC TTTTATCATC 
    ATCATCACGA TTGGTACTAT ATACTCCATC ATCAACCATC ATGATCTTTG 
    TTTGTCAGTG ACTCATGATG AGATGACGCC AAATTACAAT TTCTTTATCT 
    CACTCACTTT TCATTAGACT CTTTACTCTT TTAAGGCTTT TAAAGACAAA 
    ACTAATAAAA GAGCTAATTG GGGAAATAAC CACAATTAAT TAACTAAAGC 
    CACTCTTTTG GATTGATACA AGCATCTAAT AGTTTCCATT CCTCAGTTCC 
    TTCTTCAGGT TTCTGCATCG CACAACAAGA GACAAACACC ATCAGTAGTT 
    AAGTTTCATT AGCTAAGATG AAACAAGATT TAGTTTCTTG AATCAAGAAA 
    CTTTACATGG TCT

AT4G03210.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 9
Curator Summary
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
Computational Description
xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Beta-glucanase (InterPro:IPR008264), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 2067 Blast hits to 2047 proteins in 283 species: Archae - 0; Bacteria - 225; Metazoa - 0; Fungi - 377; Plants - 1377; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03210.2

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 9
Curator Summary
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
Computational Description
xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR