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13-5983-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18675538 [Map]; Strand: w
      • AT5G46050.1 - [+] show detail - peptide transporter 3
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 13-5983-1 - 5-prime edge 
    GGTTTGGTGG ATGAGACCAT GATCAGCAGC AGACTTTGAG TCTATACCTG 
    TTACATAAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18675461 [Map]; Strand: w
      • AT5G46050.1 - [+] show detail - peptide transporter 3
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 13-5983-1 - 3-prime edge 
    ATGAAAACGG TAGNAGGTAT TTTACCGGAC CGTTACCGAC CCGTTTTCAT 
    CTAAAACTAC CATTAACCAT CTTTGCTTTG CTTCCACAAT TCGTCCTAAT 
    GGGTATGGCT TGATTCGTTC TTAGAAGTTG CAAAGCTACC AGCCCCG

AT5G46050.1

Model type
Protein coding
Short Description
peptide transporter 3
Curator Summary
Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.
Computational Description
peptide transporter 3 (PTR3); FUNCTIONS IN: dipeptide transporter activity, tripeptide transporter activity, transporter activity; INVOLVED IN: in 12 processes; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G46040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR