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13-6088-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18050610 [Map]; Strand: w
      • AT4G38600.2 - [+] show detail - HEAT repeat ;HECT-domain (ubiquitin-transferase)
        Distance: -1358; Region: intergenic
      • AT4G38620.1 - [+] show detail - myb domain protein 4
        Distance: -2941; Region: intergenic
    Flanking Genome Sequence: 13-6088-1 - 3-prime edge 
    TTTAATATAA AGACCAAACT TGAGGAAGAA GAAACAAAAA TATATATGGT 
    CTTTCACGAC ATGTAACAAA TTTTTTTGAA GCAAATACAT ATTTCCGCTG 
    GCAGATAGTT TCAATGACAA AAAAACAGTC ATAAGGAACG AACGCAAGCT

AT4G38600.2

Model type
Protein coding
Short Description
HEAT repeat ;HECT-domain (ubiquitin-transferase)
Curator Summary
encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.
Computational Description
KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 6273 Blast hits to 5534 proteins in 324 species: Archae - 2; Bacteria - 240; Metazoa - 3391; Fungi - 909; Plants - 600; Viruses - 3; Other Eukaryotes - 1128 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38620.1

Model type
Protein coding
Short Description
myb domain protein 4
Curator Summary
Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2.
Computational Description
myb domain protein 4 (MYB4); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 32 (TAIR:AT4G34990.1); Has 9208 Blast hits to 8453 proteins in 515 species: Archae - 0; Bacteria - 0; Metazoa - 855; Fungi - 510; Plants - 6018; Viruses - 3; Other Eukaryotes - 1822 (source: NCBI BLink).
Link
InterPro Scan - TAIR