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Mutant Lines
13-6117-1

13-6117-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 3793382 [Map]; Strand: w
  - AT1G11290.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT1G11300.1 - [+] show detail - protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;ki...
    Distance: -856; Region: promoter
Flanking Genome Sequence: 13-6117-1 - 5-prime edge
```
CTTGCGGGCC TCATTTACCT GCCTACACTT GGCATACATA TTCTCAAGCC 
CAGTCATGGC AAACAAATCC AACGAGAACC CACTCTTCAC CAACAACCCA 
TGAATTTCCT TTCCAACCCT GAGCTCTGCT TCGTCTCCAC AAACTTTGAG 
GAGATAAGTG AAGTTATACA CAACAGGCTC TACATCATCA TACCTCATCC 
GAACAAAAAA ATTCAAAGCT
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 3793266 [Map]; Strand: w
- AT1G11290.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT1G11300.1 - [+] show detail - protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;ki...
  Distance: -972; Region: promoter

CCCGCAAGGT GTTTGATAGA ATGCCTGAGA GAGATTTGGT TTCTTGGAAT 
ACAATTGTGG CTGGGTATTC ACAGAATGGG ATGGCGAGAA TGGCTTTGGA 
AATGGTTAAG TCAATGTGTG AGGAGAATCT GAAGCCTAGT TTTATCACTA 
TTGTTTCTGT TTTGCCTGCT GTCTCTGCTT TGAGGTTGAT TAGTGTTGGC 
AAGGAGATTC ATGGGTATGC TATGCGGTCT GGATTTGATT CTCTTGTCAA 
TATCTCCACT GCTTTGGTTG ATATGTATGC GAAATGTGGA TCTCTGGAAA 
CTGCTCGGCA GCTCTTTGAT GGGATGTTAG AAAGGAATGT TGTTTCATGG 
AATT

AT1G11290.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Curator Summary: Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.
Computational Description: CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G11300.1

Model type: Protein coding
Short Description: protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding
Computational Description: protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-2 domain (InterPro:IPR013227), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11330.2); Has 247442 Blast hits to 123826 proteins in 4585 species: Archae - 216; Bacteria - 26920; Metazoa - 91063; Fungi - 20518; Plants - 70734; Viruses - 831; Other Eukaryotes - 37160 (source: NCBI BLink).
Link: InterPro Scan - TAIR