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13-6188-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19181801 [Map]; Strand: w
      • AT2G46690.1 - [+] show detail - SAUR-like auxin-responsive protein family
        Distance: 334; Region: intergenic
      • AT2G46700.2 - [+] show detail - CDPK-related kinase 3
        Distance: 869; Region: intergenic
    Flanking Genome Sequence: 13-6188-1 - 5-prime edge 
    GGGNNAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCATT GTAATGTGAT ATAAGAAATT AAATATAGAA 
    AAAGAGGAAA ATAAAGGAGA GATTCTCTGA AATTAGTTTT TGTATAAAAT 
    ATTTCCTTTT ACCTTACATT GTAACAGGCT GGTCCTCTAA AGCATTAAAT 
    CTTTCATTTG ACTATTACTA GTGATATTTT AATCAATAGA GAATACATAC 
    ACATCGAAGT AAATAGCAAT GCATCTTCCA ATGTTAGCAG GTTACTCATG 
    CATTCTTCAG AGTCTTTTAC TCTATGCGTT AATTCCAAAG ATCCTATTTC 
    ACCAATCACA ATATCACACA GTAAAAAGGA TGAGACCAAG AAGATCCTAT 
    CTTCTTACTG ATATCTTTGT AGTTTGTATA CATTCTACAA AAAAATATGG 
    GCAGTACTAC AATCTAATCT CATTTATATT AAATATAACT ATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19181797 [Map]; Strand: w
      • AT2G46690.1 - [+] show detail - SAUR-like auxin-responsive protein family
        Distance: 330; Region: intergenic
      • AT2G46700.2 - [+] show detail - CDPK-related kinase 3
        Distance: 873; Region: intergenic
    Flanking Genome Sequence: 13-6188-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    TCCTATATAT ATATATACCA CAATTATGCT TTATTTNCAA CATTCCTAAT 
    ACAATCCCAA AAAATCACAA TNTGTTTTAT GAAGTCTTNA TAAAATTAAA 
    ATTTATGGTA TTTNNGGAAT T

AT2G46690.1

Model type
Protein coding
Short Description
SAUR-like auxin-responsive protein family
Computational Description
SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT3G61900.1); Has 1291 Blast hits to 1280 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1290; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46700.2

Model type
Protein coding
Short Description
CDPK-related kinase 3
Computational Description
CDPK-related kinase 3 (CRK3); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase (CDPK) family protein (TAIR:AT5G24430.1); Has 97610 Blast hits to 96449 proteins in 2853 species: Archae - 105; Bacteria - 12972; Metazoa - 36079; Fungi - 11803; Plants - 17625; Viruses - 411; Other Eukaryotes - 18615 (source: NCBI BLink).
Link
InterPro Scan - TAIR