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Mutant Lines
13-6203-1

13-6203-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 7890438 [Map]; Strand: w
- AT3G22310.1 - [+] show detail - putative mitochondrial RNA helicase 1
  Distance: 419; Region: intergenic
- AT3G22320.1 - [+] show detail - Eukaryotic rpb5 RNA polymerase subunit family protein
  Distance: 426; Region: intergenic

CTTGGGTGTG ATCCCCTTTG TAGTGAATCC AGATTTAGTT TCATCCAGTC 
TTATAGGCCC AAGAACGGGT TCTTGTACAC ATACTTGGTG ATTCTGAGGG 
TTACAAAGCT GAGATCCCAT AAACGTTGAA AGGCGTTCAG GTGGTGGTAT 
AAGAATCATT GAGATGAGTA AAACAGTCAA CACCACCCAC AAGGGCATGC 
AAATCAATGG TAGCCATCTC AACACCATCC CCCAGCTTCT CCATTTGGAG 
ACATTTTGAA AAAGACTCAA GAACGGCGCC TGTACAACCG TCAACACTCA 
TCCACAGCTG ATCTGAAGTC AGTAATACTC TGGAAGAAGT ATCAGTTTTG 
AACATTTTAA AAATTGATAT TTACGATTTT TTTCTTTTTA GGGTGTTAAG 
GAATGGGGAT TATCGACAAA CAAGTGATGA ATCAGATTAT TAACAAAATA 
TGGCATTTGT TGGGATGAAC AAATACAAAC AAGTCGGAAT CGGATCTTGC 
AAGTTTTTGG ATAGAAAACT AATACAAATA AGTTGTTTCA AGCT

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 7890322 [Map]; Strand: w
  - AT3G22310.1 - [+] show detail - putative mitochondrial RNA helicase 1
    Distance: 303; Region: intergenic
  - AT3G22320.1 - [+] show detail - Eukaryotic rpb5 RNA polymerase subunit family protein
    Distance: 542; Region: intergenic
Flanking Genome Sequence: 13-6203-1 - 3-prime edge
```
CACCCAAGGA GCTTGGTATT ATTATGCTAG CTATGCAGAG CCAAGCCTTT 
TCGTTCAGCA GCTAGTTGCA TGCTCTTGCT ATGCAGTGCA TCAAGTTTTG 
CGAAATGAAG GCTAATTAGT TGTGAAACAT AAGAGTAATG CNTTTTTGTA 
GTGAACAATA ATTGTCGACT GTGTTTTATT TTTGTTGGTC AGATATGAGA 
ATTAAAGCT
```

AT3G22310.1

Model type: Protein coding
Short Description: putative mitochondrial RNA helicase 1
Curator Summary: Sequence similarity ot DEAD-box RNA helicases. Binds RNA and DNA. Involved in drought, salt and cold stress responses.
Computational Description: putative mitochondrial RNA helicase 1 (PMH1); CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: putative mitochondrial RNA helicase 2 (TAIR:AT3G22330.1); Has 154573 Blast hits to 81509 proteins in 3841 species: Archae - 1406; Bacteria - 64973; Metazoa - 34940; Fungi - 12014; Plants - 11424; Viruses - 1269; Other Eukaryotes - 28547 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G22320.1

Model type: Protein coding
Short Description: Eukaryotic rpb5 RNA polymerase subunit family protein
Curator Summary: Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5.
Computational Description: NRPB5; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381), RNA polymerase, subunit H/Rpb5, conserved site (InterPro:IPR020608); BEST Arabidopsis thaliana protein match is: RNA polymerase II fifth largest subunit, C (TAIR:AT5G57980.1); Has 1046 Blast hits to 1046 proteins in 368 species: Archae - 260; Bacteria - 0; Metazoa - 162; Fungi - 216; Plants - 118; Viruses - 20; Other Eukaryotes - 270 (source: NCBI BLink).
Link: InterPro Scan - TAIR