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15-0002-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5848272 [Map]; Strand: w
      • AT5G17720.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 619; Region: intergenic
      • AT5G17725.1 - [+] show detail - transposable element gene
        Distance: 24; Region: intergenic
    Flanking Genome Sequence: 15-0002-1 - 5-prime edge 
    AGTGTGGATA AAGTAAATGT GACGTGATAC TTTGCACGGT CATTGATAGA 
    CAAATTTTTT TTTTTTNTTC AANCATNCNA ATNTTNTTNN AAANCCTNAG 
    NANCNNANCC NNGGTTTNTN NNGGTNAATN TTGGGGNCTA NCCAANTAAA 
    NGGACTNCAN TNTANCCCAN CTNGANAAAT NGNAAAAAAA AAAAANNCTT 
    TCNANNCCAA NAAATNNGCC CCCCGGTTNG NTTNTTTTCN TNGNANCCNA 
    ANNNAAGGTT NNNGNANCCN CCGGGTNGGC CCGGAAANGN NANNAANNNA 
    NCNGNTNAAN CCCGGCCNNN TNTCNGGTTN NTTNANCCCC TTCCCNAAAN 
    CCNGGNAATN ANTTNNAAAC NCTNCCTGGG NANCCCCAAA ATNGNNAAAA 
    NANCCCNTNN CCCAATTTAG GGCCGTNGNT TTNGNTTCAA AACTAAAANC 
    CAGGGNGGGG TTTNCTTNAA ANCCANCCCN TTTCNNNGCN CCAGTGGCNT 
    NTTTNANTTT CCAACCAACN CCANNTTTNT ANNTTTAANC CTTCCNNGCN 
    GAATAAACGT NGNNTTNGTT TNTTCNAGGN NAAGGNGGTN GCCAAGTTNC 
    AGGGGTGGGG CTTTCCTNAG GAAATTNGGG GNAAATNACN GGGNTNGNTN 
    ACCCATNCCT TTTNAACCAT NNAANCCTTT TCCAAAACCN GCGGGGNANC 
    CNNNTNGTGG NNNGNAAAAC AANNNTNGTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5848156 [Map]; Strand: w
      • AT5G17720.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 503; Region: intergenic
      • AT5G17725.1 - [+] show detail - transposable element gene
        Distance: 140; Region: intergenic
    Flanking Genome Sequence: 15-0002-1 - 3-prime edge 
    TCCACACTGC ACCAATTTTT TATATCAAAA AATGAAATTA TGTACAAGAA 
    ATCTATTTAA ATAAAACTCA TAATTCATAA ATCAATCAAT CCACCAATTG 
    CCTCATTAAG ACTTAAAAGA TACCTCTGGT GGTAAATAAA AGATGCATTG 
    TGAAGGTTAT CATTAACTCC CAAACTCGCT CAATAGCGAT CCACGAAGCA 
    TTAACACCAC AAAACTACAC TGCAACGTTT GGGCCTACAT GTGCTAAAGA 
    TC

AT5G17720.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G17780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G17725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.9e-07 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)
Link
InterPro Scan - TAIR