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15-0117-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8386798 [Map]; Strand: w
      • AT1G23710.1 - [+] show detail - Protein of unknown function (DUF1645)
        Distance: 372; Region: intergenic
      • AT1G23720.1 - [+] show detail - Proline-rich extensin-like family protein
        Distance: -1857; Region: intergenic
    Flanking Genome Sequence: 15-0117-1 - 5-prime edge 
    GNTGAAGCTA GGNACACANA TCATTCANNC GANGCTATAG TNNTCNGGAN 
    AAANNANCAC CANACNCAAA GAGGANACAG NANCCNGGGA CAACNCACNA 
    CGACTNACCN ANCCCNACAA CTAAAAGTNA ANATANCGAG AGCNCAATNT 
    GAGATGANNG TATAGAAGTG GGAAAATGAT TTTTTCCCCT ATTTTGGCAA 
    AGAAAATAAA AAGCCTTAAT CGTCCTTTGT GGCAAGCAAA AATAATTTTT 
    GTTTTTTCCC TTGACTTCAA ATTGTTGTGA ATCTTTAAAG ATAACATAAT 
    CATGTCTTTA TGTGTAAAGT AACTGACCAT ATTTAACTGG TCATTTGAAA 
    ATTATATTTA ACTATATCAG AAACAATCAT ATAGGCAATT ATATTAGAAA 
    AACAATTCTT GTTGTTTAGA AGTTAAAAGT TTAGAATGAA AAAAATATAT 
    ATATATATAT ATATANAACA ATATTTANTG CACATTTATA TTNCGANATA 
    NACATCTATA NAAACAAATA CTCATGGGNG AGATANNTTT TTTTTNTNNA 
    AAAAAATATN GNGNGNGNGT CNATTNNAAA AAAAGAANNN CTTTGNTTTG 
    TANCGTCTAT CGANAAATCN AAAATACNAN AGAGTCNTTT ANGCAAACGA 
    GGGCACGAGT TANNTTTNNA ACAANNGGNG GNTANAAAAT NNGAAAAAAA 
    NANGCGGANG NTNNNTACAA TGGAGGNTGN AAGATNANGN GTGNNTTANT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8386689 [Map]; Strand: w
      • AT1G23710.1 - [+] show detail - Protein of unknown function (DUF1645)
        Distance: 263; Region: intergenic
      • AT1G23720.1 - [+] show detail - Proline-rich extensin-like family protein
        Distance: -1966; Region: intergenic
    Flanking Genome Sequence: 15-0117-1 - 3-prime edge 
    GTTTCAGCAT CATTTTGAGA ACGATAAGAT TATTTACATT GTTCCTTGTT 
    TCAGCATCAT TTTGAGATAT CAACAATTAT TCAACACAGT CAAAAAGACA 
    AGTTGTTCAG CTATACTCTA GGATCAACGA ACATCTAGTG TCCTCACAAG 
    ATCAATTAAC TTCTTGTGAG CTTTTATCAC TTAGCTGAAG TATACCAGTT 
    GATATCAGTC TTCTTTTGCA AAATCATTCA ATTTTACTAA AATCTACTTA 
    AGCAAATCGA ACTATTTTAT ATATTTTTTT ACTTACAAAA TGGTTTAGTA 
    CACAAGCCAA ACTCTTCACA ATAACACCAG AAAATAGTGA AAAAAAACAG 
    TACACCTTTC TGCAATCATT TAAAATTTCA ATCTACCAAG CAGAAGTGAC 
    CCCAAAGAAG AGTACTAAAT TAATTTTTTT TTTACNTANC CAAAAAACAA 
    AAAAAAATCC CCCAAAANCC AANCTTANTT TTTNTTTTTG TCAAAANGGA 
    TNAATNTTTN NGCTAAAACC NTTCACNTTA GNGAAAAACC CGACTTGTTN 
    GTNCGGAAAA TACAATCTGG GTTNAACTTT TTCCTTNATN GCTCTGTTTC 
    TCATGTATAG CTTNTCANGC CCCGATTTAG TCGNNGNCGT NTTNTTTTTN 
    GTNTCCGACN ACGTNAAAGT TTTCTCCTTC CCCTTNNNNT TNNNTGGNNT 
    ACCTTNTNNT NATTNCCCCC NCCNCCNNAA ANAANAACAA NAAAA

AT1G23710.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1645)
Computational Description
Protein of unknown function (DUF1645); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1645) (TAIR:AT1G70420.1); Has 288 Blast hits to 282 proteins in 52 species: Archae - 0; Bacteria - 6; Metazoa - 16; Fungi - 11; Plants - 191; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G23720.1

Model type
Protein coding
Short Description
Proline-rich extensin-like family protein
Computational Description
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; EXPRESSED IN: hypocotyl, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT4G13390.1); Has 541802 Blast hits to 61860 proteins in 2130 species: Archae - 1218; Bacteria - 96253; Metazoa - 194950; Fungi - 87318; Plants - 78001; Viruses - 13090; Other Eukaryotes - 70972 (source: NCBI BLink).
Link
InterPro Scan - TAIR