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15-0200-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4111142 [Map]; Strand: c
      • AT3G12910.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: 494; Region: intergenic
      • AT3G12915.2 - [+] show detail - Ribosomal protein S5/Elongation factor G/III/V family protein
        Distance: -1487; Region: intergenic
    Flanking Genome Sequence: 15-0200-1 - 5-prime edge 
    TATACTGACT CGATTGTAAA CTGAGCTAAT CGTCTCTTAA ATTGACGAAT 
    TTACGAAATC TGGAGATAAA AGGAACATGA ACAATCGTAT TCATCATCCA 
    AACTACAAAC AGAATCTCGG CTCTTCGCTC TCAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4111258 [Map]; Strand: c
      • AT3G12910.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: 610; Region: intergenic
      • AT3G12915.2 - [+] show detail - Ribosomal protein S5/Elongation factor G/III/V family protein
        Distance: -1371; Region: intergenic
    Flanking Genome Sequence: 15-0200-1 - 3-prime edge 
    TCAGTATATA TCGAATTAAA CTGCAGAGGT TTTGGGNGTT CCCGAGACAT 
    GACTAGGATA TGGTTCAATA AACAGTTGGA ATTGGCGTGA AAATTGTAGA 
    TAGGTTAAGC TN

AT3G12910.1

Model type
Protein coding
Short Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Computational Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 42 (TAIR:AT2G43000.1); Has 2920 Blast hits to 2915 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2920; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12915.2

Model type
Protein coding
Short Description
Ribosomal protein S5/Elongation factor G/III/V family protein
Computational Description
Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G56070.1).
Link
InterPro Scan - TAIR