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15-0257-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 555954 [Map]; Strand: w
      • AT2G02160.1 - [+] show detail - CCCH-type zinc finger family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-0257-1 - 5-prime edge 
    GTCGCAGGCG CAAACATTAT TATTACTTGG AAATTTCTGA ATCTCTCTTT 
    CAAGTAGATC GCAAGGTTTC AGATCGAAAC CCTAGGAAGA TCGAAAATCA 
    CCGATTCAGA GAGAGTCCCG TGGAAGAAGA AGAAGAAGAC GAGCCGCCAC 
    AAAGAGCGCA CCAGAGAGAA ACTCGCGACT GTGTGTGTGT GCCCTTTAAA 
    GCTAAGCCTA AAAGTTTTTT TTTGGGCTCT TTTTTTTTNT TNNGGGNGGG 
    GAAATNTCAA TANATNANGT TCGGTTTNTT TGTAATCAAT NAAATNCTGN 
    CCCGGGGGGA TTTNTTNTNG GTTTNTTNGT TACCCNTNTN GTTNGCCTNG 
    ATTTTATAAC TTNNGNGGGA NCCNNCNACT TNGGANNGNN GGNAAATAAA 
    CAANGATANG GGGNTTTAAN CCGANNTTGA NCCAAANTNG TAANCCGNTG 
    GGNANATTTT TNACAATNAA ACTTNGGCGG GGNAATTTAN CCAAAAAAAT 
    TCCNNCCCAA AANCAAANCT TGGGTTTTNN CTTTGGNAGG GACTTTTNGA 
    ACCNANTNTT TCAAAAATNT NNCAAAACCA AATTTTGAAG ATTTCCNNGN 
    CCCCCTANAA AATNNCAAAA AANAANTTTT TAAANNTNAN ANNNNGGGCN 
    NNNNNCCCCC CNNCCCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 555838 [Map]; Strand: w
      • AT2G02160.1 - [+] show detail - CCCH-type zinc finger family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-0257-1 - 3-prime edge 
    CCTGCGACTC AACCGCAACA GCAACATGAG CAGAAGAAGC AATCAGAGAC 
    TGTTTCATCT GCTGAAGAAG ATGCTTTGAA GTGGAACACC GATTGCGTTT 
    ACTTTCTCGC TTCTCCTTTA ACCTGCAAGA AGGTAATTGA TTTTTGATTA 
    TTGTTTCGCT TAGATCTTAT CCAGTTTCTG CTTCAATTAG GGTTTTGGAT 
    TTGAGATCTC AAGTTTCTTT CACCCGATTT CAAGTTTCTC TGTGTTTTTG 
    TGTCCCTCGA AGCTATCTAT ACATACTTCA CTTCTCCATC TGCTTAATTT 
    TGGTGCGAGA TTTAGATCTG GTGATTTCGA ACCTCGTGAT TCTAAGTATT 
    GTTGTTTCTT AGGGCTTCTT GTTAGCTAGA TTGAAAATTA CATATACAAA 
    GCT

AT2G02160.1

Model type
Protein coding
Short Description
CCCH-type zinc finger family protein
Computational Description
CCCH-type zinc finger family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 10885 Blast hits to 7444 proteins in 511 species: Archae - 23; Bacteria - 415; Metazoa - 5228; Fungi - 922; Plants - 581; Viruses - 184; Other Eukaryotes - 3532 (source: NCBI BLink).
Link
InterPro Scan - TAIR