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15-0292-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7599468 [Map]; Strand: w
      • AT1G21650.1 - [+] show detail - Preprotein translocase SecA family protein
        Distance: 0; Region: exon5 (CDS)
      • AT1G21650.2 - [+] show detail - Preprotein translocase SecA family protein
        Distance: 0; Region: exon5 (CDS)
      • AT1G21650.3 - [+] show detail - Preprotein translocase SecA family protein
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: 15-0292-1 - 3-prime edge
    ATTGCGGAGA TGAAGACAGG TGAAGGGAAA ACACTAGNTT CTACCTTAGC 
    TGCATATCTT AATGCATTAA CTGGTGAGGG CAGTTCATGG TATGTTGTCT
    GCGCTCTCTG ACCACTTTAC GACTTGAAAT TGCNTGGTCT TTTTGAGGAA
    GGCCAGTGAG ATGTATGGGA AATTTCCCCA CAATATTGAT NGACAATTAT
    ATACCTATGA AGAAAATATC ATTTAACATC TAGCTAAACT TTTTGGTGTT
    GATATTTTAT TGCCAGTGGT TACTGTGAAT GATTACCTGG CACAGCGTGA
    TGCTGAATGG ATGGGTCGTG TTCACCGCTT CTTANGCCTT TCAGTTGGTC
    TCATTCAGGT AGGTTACATG GGTGCTAATT GCATCTCACC TTCTAGATTT
    TAAAGCAGAA CATTAGTGAC ATTCCTTATA AACCTGAGTC AACANTCAGA
    GAGGGATGAA AGCTGAAGAG AGAAAATTCA ACTATAGCTG TGGATATAAC
    ATACACCCAN TNACCTCNGG GNGNATATCA TTCATNTCGA NTTCTTCNAC
    TTGGATAAAT NNTTTTTTAA NTNTGTCCAT NTNCCNCCAA AACCTNNTTG
    NTTNACNTCA AGANCCTNGG AGTTNGATTT ATCTAANNAG AATGCCCNTN
    NNNNCAACCC NGCAANNNAN CTTTGGNGNG NAAGNTGGGG GGATGCCNNT
    ANATNCGATT NGTTCCCCNN NAN

AT1G21650.1

Model type
Protein coding
Short Description
Preprotein translocase SecA family protein
Curator Summary
Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality.
Computational Description
Preprotein translocase SecA family protein; FUNCTIONS IN: ATPase activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, ATP binding; INVOLVED IN: intracellular protein transport, protein targeting, protein transport by the Sec complex, protein import; LOCATED IN: internal side of plasma membrane, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecA, preprotein translocase (InterPro:IPR022491), SecA motor DEAD (InterPro:IPR014018), SecA Wing/Scaffold (InterPro:IPR011116), SecA preprotein, cross-linking domain (InterPro:IPR011130), SecA conserved site (InterPro:IPR020937), SecA DEAD-like (InterPro:IPR011115), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: Albino or Glassy Yellow 1 (TAIR:AT4G01800.1); Has 21976 Blast hits to 13078 proteins in 2820 species: Archae - 0; Bacteria - 13647; Metazoa - 53; Fungi - 1; Plants - 97; Viruses - 0; Other Eukaryotes - 8178 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21650.2

Model type
Protein coding
Short Description
Preprotein translocase SecA family protein
Curator Summary
Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality.
Computational Description
Preprotein translocase SecA family protein; FUNCTIONS IN: ATPase activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, ATP binding; INVOLVED IN: intracellular protein transport, protein targeting, protein import, protein transport by the Sec complex; LOCATED IN: internal side of plasma membrane, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecA Wing/Scaffold (InterPro:IPR011116), SecA preprotein, cross-linking domain (InterPro:IPR011130), SecA, preprotein translocase (InterPro:IPR022491), SecA DEAD-like (InterPro:IPR011115), SecA conserved site (InterPro:IPR020937), SecA motor DEAD (InterPro:IPR014018), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: Albino or Glassy Yellow 1 (TAIR:AT4G01800.1).
Link
InterPro Scan - TAIR

AT1G21650.3

Model type
Protein coding
Short Description
Preprotein translocase SecA family protein
Curator Summary
Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality.
Computational Description
Preprotein translocase SecA family protein; FUNCTIONS IN: ATPase activity, zinc ion binding, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, ATP binding; INVOLVED IN: intracellular protein transport, protein targeting, protein transport by the Sec complex, protein import; LOCATED IN: internal side of plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, RING-type (InterPro:IPR001841), SecA, preprotein translocase (InterPro:IPR022491), WD40 repeat (InterPro:IPR001680), SecA motor DEAD (InterPro:IPR014018), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), SecA Wing/Scaffold (InterPro:IPR011116), WD40-repeat-containing domain (InterPro:IPR017986), SecA preprotein, cross-linking domain (InterPro:IPR011130), SecA DEAD-like (InterPro:IPR011115), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), SecA conserved site (InterPro:IPR020937), WD40 repeat, subgroup (InterPro:IPR019781), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G21651.1).
Link
InterPro Scan - TAIR