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15-0519-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7241762 [Map]; Strand: w
      • AT1G20823.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 2093; Region: intergenic
      • AT1G20820.1 - [+] show detail - pre-tRNA
        Distance: 999; Region: intergenic
    Flanking Genome Sequence: 15-0519-1 - 5-prime edge 
    CGTGTGAGGT TGCTGGAGGC CGTAAGAATA AAGTGTAAAA GAGTACTTTT 
    TCGTTTACTT GGTTATAAAG TTCGGTTTAT GTATAAAACT ATAAAACTAG 
    AGCTTCACGA TCATTACAAA TGTTTTATCA TTTAGGATAT TAAAAATGTT 
    AATCTGTTAC GATCATCAAA AAATACTGAA ATTTTGAAAA CTAGCTAGCT 
    TGTAAGAAAT CTTTCTTCAA GAAAAAGAAG TAGAAACCAG AAAGTGAAGA 
    GAGTGCTTTA TGTTTTGTCC AAGGACTATA AATTCGCAGA CTAAAATGAT 
    GAGAGTTGTA AAGTTTGCCA ATGAGGCTGG AGATTCCCAT ATTTATTATG 
    TNCAGCACTA TTTTGTGCAT TACTGATTGT TTCTGTTTAT TACGTAAATG 
    ATTAATACCA CTTTTTAAAA ATGGGNTGTT GCAAAATAAA CCTTTGCAAA 
    ATAAATATTA CACTGTACCA TTGTATACAT TGTTAATTCT TTCAAACAAA 
    GTATTAGTGT TTACACGTCA AACACACTTT GAAAACTACA ACATTCATTT 
    TGTTTTGTTA AAGTATTTTC TGCATGCAAA CGCAATTTCC AAACAAGATT 
    TTTTTGGCCT GTCTACGTAT ACTATTCCTA AAAACATCTT ATGAAAAACC 
    TAAAAAAAGG TTTTAATATT TTTATGTGAG CGCATATGCT AAATTTAACC 
    NTAGATAAAT TCCCACAAAA CCAAATGGCA AAGGCAAAGA ATCCATCAAC 
    CCTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7241646 [Map]; Strand: w
      • AT1G20823.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 1977; Region: intergenic
      • AT1G20820.1 - [+] show detail - pre-tRNA
        Distance: 1115; Region: intergenic
    Flanking Genome Sequence: 15-0519-1 - 3-prime edge 
    CTCACACGAG CCTCTCACGT ACGTATTCAG CAGCCCTTAA AGTAAACCCA 
    ATTACTCTTG CAAAATGTTT TTCAACATGC GGGTATTAG

AT1G20820.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Trp (anticodon: CCA)
Link
InterPro Scan - TAIR

AT1G20823.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G76410.1); Has 9063 Blast hits to 9039 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 637; Plants - 4964; Viruses - 26; Other Eukaryotes - 1095 (source: NCBI BLink).
Link
InterPro Scan - TAIR