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15-0536-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6277988 [Map]; Strand: c
      • AT1G18250.1 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G18250.2 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-0536-1 - 5-prime edge 
    CTGAGAAGTA ACAAGTTGAT TCAGTCTCAC TCTTGCTCAG TAGAGCTCCC 
    ATCAATGGCT TCAATCAACC TCTTCCTCTT CGCTTTCCTT CTTCTTCTCT 
    CTCACGCTTC AGGTTTCTCT TCACATTCCC TGCTAGATCT TTAAATTTTC 
    TGTTTCGTTT AGTCTTTGCT TCAATCTCGC CCATGTATGA ATAAAAATGC 
    ACTTTTTAAA TATAGATTTA GAGATACTTT AGTTGCAGAT TTTTCTAATA 
    CCACTATCTT TGTTGTTGTT TCTTTGAGAG CAGCTTCAAC GGTAATCTTC 
    TACAACAAAT GCAAACACCC AATTTGGCCA GGTATCCAAC CCAGCGCCGG 
    TCAAAACTTA CTCGCCGGCG GTGGTTTTAA GCT

AT1G18250.1

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Curator Summary
encodes a thaumatin-like protein
Computational Description
ATLP-1; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G73620.1); Has 1566 Blast hits to 1554 proteins in 172 species: Archae - 0; Bacteria - 23; Metazoa - 54; Fungi - 80; Plants - 1398; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G18250.2

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Curator Summary
encodes a thaumatin-like protein
Computational Description
ATLP-1; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G73620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR