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15-0743-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7648700 [Map]; Strand: w
      • AT1G21750.1 - [+] show detail - PDI-like 1-1
        Distance: 0; Region: exon9 (3UTR)
      • AT1G21760.1 - [+] show detail - F-box protein 7
        Distance: -494; Region: promoter
    Flanking Genome Sequence: 15-0743-1 - 5-prime edge
    AGACAGACAG AGAGAATCTC TTTATCTATT CATTAGGTTT TTATATGTGC 
    ACTCTTCAGA ACAATAATGG CTGCCTCCTT TTCTTTTTTT TGGTTGATGT
    TACCTTTTTT TGTTTGAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7648584 [Map]; Strand: w
      • AT1G21750.1 - [+] show detail - PDI-like 1-1
        Distance: 0; Region: exon9 (3UTR)
      • AT1G21750.2 - [+] show detail - PDI-like 1-1
        Distance: 0; Region: intron9 (CDS)
      • AT1G21760.1 - [+] show detail - F-box protein 7
        Distance: -610; Region: promoter
    Flanking Genome Sequence: 15-0743-1 - 3-prime edge
    ATCTGTCTGT CGTCTCTCTC TCTCTGTCTC TCAGTCTACT CAATGCTCTG 
    TCTTCTTCTG TGTATTTTCC TCAAAACTAC CAAACTAAGC TAGCAGCTAA
    GAGACACAAC ACACTTCTCT TTTCAGAGCT CATCCTTGAC TTCCTCAGTT
    GTCTCTTCCT CCTTCTTAGG CTCTCCAACT GTGTCCTTGT TCTTGTCGAC
    GAAGCT

AT1G21750.1

Model type
Protein coding
Short Description
PDI-like 1-1
Curator Summary
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.
Computational Description
PDI-like 1-1 (PDIL1-1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Disulphide isomerase (InterPro:IPR005788), Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-2 (TAIR:AT1G77510.1); Has 31573 Blast hits to 17834 proteins in 2924 species: Archae - 337; Bacteria - 15428; Metazoa - 5451; Fungi - 1644; Plants - 2422; Viruses - 29; Other Eukaryotes - 6262 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21750.2

Model type
Protein coding
Short Description
PDI-like 1-1
Curator Summary
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.
Computational Description
PDI-like 1-1 (PDIL1-1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-2 (TAIR:AT1G77510.1); Has 30765 Blast hits to 17459 proteins in 2902 species: Archae - 337; Bacteria - 14753; Metazoa - 5498; Fungi - 1629; Plants - 2433; Viruses - 29; Other Eukaryotes - 6086 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21760.1

Model type
Protein coding
Short Description
F-box protein 7
Curator Summary
This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures.
Computational Description
F-box protein 7 (FBP7); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 471 Blast hits to 471 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 249; Fungi - 132; Plants - 70; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Link
InterPro Scan - TAIR