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15-0797-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13577978 [Map]; Strand: w
      • AT4G27050.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G27050.2 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G27050.3 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G27050.4 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-0797-1 - 3-prime edge
    GCTTTTGGTA ATGTTACTCT GGTTCTTTCT TTGCTAAGGA ACAACAACAA 
    CATCCCACCG GAAGAATTAA TGAATTGAAT GAAACTTTAT TCCTCTTCAT
    CATCGACATC CTTCTCTTTC TTCAATTCGG TAAGATTTCT TGGAGCAGAC
    NTTTAGATCG ATTTAAACCA ATTGTTATTT TTTGTTGTTG TCGGGTGTGT
    TTTAATGTCA ATCTCTTGCT CTCATTGCTG GCCTGGGTAA CCAAGTTTGA
    GCTTATTCCT TTTGATTCTG CCCGGATCTC TGATTTTTTA AGGTGAGATT
    CCTAAACATG TCAATTACTG TTTTTTTTTA AACATTCTCA ATTTTCTTGA
    GTTGGNGACG TTTTCNANAT TTAGTTGATT AGTGCAAGAC GACAAGTGAT
    GAAAAGACAG ACAAAGGCTT CAAGTTTGTT GATAACTGCT GTCTAAGGAG
    TTTCCCTTGA NACATTCTGA CTCTGACGTA ANAGGTAAAA AGTTAAAAAT
    AATACTCGAC ACTTACTTGG AATTTAAAAC TGAGTTGGTT TTGAAAAAAT
    TTTTTTCTAA TTCTTTTGCA NAANAANAAA AGACTCTTTA TTAGTCTCTG
    TCTCTATGGA CACAGATCTG ATCANCAATC TCCCCNATGA TGTTCTTGGC
    AAAATCCTGT CTTTANTTCC NACAAAGCTA CCANCCCGGG CCGNNNACCA
    CNCGGGCCCN T

AT4G27050.1

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT2G29930.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27050.2

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT2G29930.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27050.3

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT2G29930.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27050.4

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT2G29930.3); Has 1798 Blast hits to 1757 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1798; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR