1. Home
  2. Mutant Lines
  3. 15-0887-1

15-0887-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8135947 [Map]; Strand: w
      • AT1G22985.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -27; Region: promoter
    Flanking Genome Sequence: 15-0887-1 - 5-prime edge 
    CCCGCTTCTT TTAAAAGAAA GATTTGTTTG GTTTATGATT CGATCAGGAG 
    AAGGCTTTGG CTTGTGCGTT ACTTAATCCA AAATTAACCG ACTTACTGTT 
    TCTCTTATCT TTTAGAATCC GTGTGTAATT ATGAGTATTG AACTATTGAT 
    CAATCTCATC AAGTCGGTTT TGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8135825 [Map]; Strand: w
      • AT1G22985.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-0887-1 - 3-prime edge 
    GACACAAACC CTAACCACCA ACCCTCTCCG TCGTCAAATT TCCCGGCGAA 
    AGATGAAACG AATTGTTCGA ATTTCATTCA CAGACATGGA AGCAACCGAT 
    TCTTCAAGCA GCGAAGACGA GTCACCACCG TCATCACGCC GTCGAGGTAA 
    GAAGCTAGTC AAGGAAATCG TAATCGATCA TTCTGATCCC CCGGAGGTCG 
    GAAAAACTCG GTTCAAAATC AGGATTCCGG CGAGTTTACT TGCTGCGAGG 
    AATACGACGG CGAATAAGAA GAAGTTCCGT GGCGTGAGGC AGAGACCATG 
    GGGGAAGTGG GCGGCTGAGA TTAGATGTGG TAGAGTTAAA GGAAGACCTG 
    AACGAATTTG GCTTGGAACT TTTGAAACAG CTGAAGAAGC TGCTCTTGCT 
    TATGATAACG CTGCGATTCA GTTGATTGGA CCTGATGCGC CGACTAATTT 
    TGGCCGTCCT GATGTTGATT CTGCGGTGGT GAAAAAGCAA GATTCTGATG 
    CTAGTGGTGG TGCTTCTGAA GAAGTTGTTT GATTTTCTTG TTTATAACTA 
    ACTTTGCAAG GTTACTTTTG TTTATCATCA TCTTTTGTAA ATTTGATCAT 
    CTTGCTCTTT GCTTTTTAAC TTCTCTTGTA CATGTTTGAA TTATAAAAGT 
    TCTAATTTTT CAATCCAGAT TCTTGGTTTT CATAATTGNA CATTTTTGAT 
    CANCATACCT ATTGCTTAAA ATTTCATATT GGGTTTNCCT TAATTGATCA 
    AAAGTCTTTN TT

AT1G22985.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G71130.1); Has 5644 Blast hits to 5509 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5631; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR