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15-0889-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4975 [Map]; Strand: c
      • AT3G01015.1 - [+] show detail - TPX2 (targeting protein for Xklp2) protein family
        Distance: -816; Region: promoter
      • AT3G01020.1 - [+] show detail - ISCU-like 2
        Distance: -129; Region: promoter
    Flanking Genome Sequence: 15-0889-1 - 5-prime edge 
    CNTGGATAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATGA AAATGTAGTT AGCAATAATA ACCAAACCTA 
    GTCTCTTGTT CTAACCAACA TAATAAGTAT AGGAAAATAT CTCGTCAAGA 
    AGAAACAGAA CAAATTATTT GATATAAGCA ACAGAGAGAA AAACAATCCA 
    AATCTTGAGA AAGGGCAAAG AGTCTGAGCT AAGCAAGAGC AGGCATGTGC 
    CACTGGTCCA ACGGCTTACC AATAGAGTAA ACAATAAACC CTATCTTCCT 
    CAGCTTCTCT GCATCAAAAA CATTTCTGCC ATCGAAGACA AACGCTGGTT 
    TCTGCATGTT TTCAAAAATC CGCTCATAGT CAAGCGTCTT ATACTCGTCC 
    CACTCGGTTA ACAAGCAGAT TCCGTGGGCG TCTTTGGTGG CAGCGTAAGC 
    GTCCCAAGCA ACTGAGACTT GTTTCACAGT GGTTGGACTC ATGGGTTGGA 
    GGTGAAGTGG ATGGTCCCAG TCGAATGTGT TCATGGTTAA GTCTCTTTGG 
    ATTTGTTCTT CCGTGACTTG TGGATCATAG ATGCTGATTC GGGCCTTGTC 
    TCCTAACAAA CCTTTGCAGA CGTCAATGGC TGGAGTCTCT CTCGTGTCTT 
    TCTTGAAGGC GAACTCGAGG ACAACAATCT TTTTGTTGGA AACAGTATTG 
    AACATCGATG AGACAATGCG GGTTCACNAA CCGGGTTTTT TTGTATAACA 
    ATCATTTNAG ATCANTTTAA CAATTGGGGT TG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 251166 [Map]; Strand: w
      • AT3G01680.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR02164...
        Distance: -815; Region: promoter
    Flanking Genome Sequence: 15-0889-1 - 3-prime edge 
    GTGTGAAGTT AAGATTCTTT GCTCTCTTTT GGGTAAAACT AAAGAATTTC 
    TTAAGCTCAA TGATATATCT TGGATAAGGC TACCANC

AT3G01015.1

Model type
Protein coding
Short Description
TPX2 (targeting protein for Xklp2) protein family
Computational Description
TPX2 (targeting protein for Xklp2) protein family; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT5G15510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01020.1

Model type
Protein coding
Short Description
ISCU-like 2
Curator Summary
Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.
Computational Description
ISCU-like 2 (ISU2); CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, N-terminal (InterPro:IPR002871), ISC system FeS cluster assembly, IscU scaffold (InterPro:IPR011339); BEST Arabidopsis thaliana protein match is: SufE/NifU family protein (TAIR:AT4G22220.1); Has 5480 Blast hits to 5480 proteins in 1991 species: Archae - 108; Bacteria - 3649; Metazoa - 148; Fungi - 153; Plants - 89; Viruses - 0; Other Eukaryotes - 1333 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01680.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR