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15-0934-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9539053 [Map]; Strand: w
      • AT1G27461.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -40; Region: promoter
    Flanking Genome Sequence: 15-0934-1 - 5-prime edge 
    GGTGTGAGTG GGGGTTGAGT ATCTTTATCA TGACGTCAAG AATGATAAAA 
    AAAAAAACCC CAAAAAAAAA AAAAAAAATT TGGNNGGGNA AAAANCAAAA 
    AAAGNGANNA GGNGGGGAAG GTTNNAAAAA GNGNNANGGN CCNNTAAAAA 
    AAAGGCAAAT TTTANGGAAA AAGGCCNTTT GGGGGNAAAA GGNNGGGNCC 
    CTNTTANNNN GGGTNGGGGA NAGGGCCCCC TNNNAAAAAA NNANTNANTG 
    NCCCCTTTTT NCAAAAAAAA ATGNGGTNCG GTNCCCCAAN CCCAAAGGAT 
    NNCCCCCCNC CCCCTNTTNT TNNNGGGCNT NNTCCNTCCC TNCCCCTNNC 
    CNCNCTTTTT TTTTNNTTAA NTTTTTGTTT TGANCCCCCC TCCAANGTCC 
    TNAAAANAAA NTTNCNNGGT TNGTTTAAAA NNTANNAAAA ANCTCCNNNC 
    CNGGNCCNNN ANCCCCCCCC CCCCCCCCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11708380 [Map]; Strand: w
      • AT5G31770.1 - [+] show detail - transposable element gene
        Distance: 6618; Region: intergenic
      • AT5G31787.1 - [+] show detail - transposable element gene
        Distance: -4733; Region: intergenic
    Flanking Genome Sequence: 15-0934-1 - 3-prime edge 
    CTCACACCAT TCTCAAACCA CAACTGGTTG GTTAGTGTTT TGGAGTCGAA 
    TATGACTTGA TGTCATGAGT ATGATTGAGT ATAAGAACTT AAACCGCAAC 
    TCGATCTTAT AAGCCTAAGT AGTGTTTCCT TGTTAGAAGA TACAAATCCA 
    AAGAATCATA CCGACTTTGG CTACACCATG AAAGCT

AT1G27461.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G31770.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.7e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31787.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32312.1)
Link
InterPro Scan - TAIR