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15-0967-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7645961 [Map]; Strand: c
      • AT1G21750.1 - [+] show detail - PDI-like 1-1
        Distance: 0; Region: intron1 (CDS)
      • AT1G21750.2 - [+] show detail - PDI-like 1-1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 15-0967-1 - 5-prime edge
    AACACGACAC AAAACCCATG TCAATTTTTT ACCAAAAAAA AACCATGTCA 
    ACAGAAATAG TAAAAAGATT GAAAAGTCAC AAAATTTGAA TACCATGGGG
    CGTANAACTC GACNACNATG AAATCGTGTT TGTTGATGGT ATCGGTGAAG
    TTAGTGTGAT CCAAGGTCAA CACGAACTCC TTCGTCTCCG TCTCTTCGCT
    TCTGATAGAC GAAGCGCACA AAGACAACAC ANGGATCGAA AACAACGTGA
    AGCCCCTCAT CGCCATTATC GCTCTCTCTT TCTCTCTAAC AATGTTTAGC
    TTGAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7646077 [Map]; Strand: c
      • AT1G21750.1 - [+] show detail - PDI-like 1-1
        Distance: 0; Region: intron1 (CDS)
      • AT1G21750.2 - [+] show detail - PDI-like 1-1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 15-0967-1 - 3-prime edge
    GTCGTGTTCG TGAATCTGGG GGATCTGAAT CTATCATTTG TGTTTTTGGA 
    TTTGCATGCC AATGATTTCT TATTCTCTCG CTTGTGTGAT TTGAATTGGC
    GTAGCTGATC TGTTTTACTA ATCAGAACTT TTTGTTGCAG TTTTGTAATT
    TGTAACGATT TGATCTATTC CGATCTATGT TACTATGTAA CNTGAGTTGT
    CTGATTTGAA TAGTGGTCTC ATTTTAATTT TACTCTGTAA TTGATTTGTG
    AAAGTATTTG ATCTAAATCT TCATCATTTG GTAATCCGTA TTATTGCCCA
    TCTTCAGGTG TGGACACTGC AAGCAGCTTG CTCCTGAGGT ACTATGACTT
    TTTCAATCAC TTAAAATAGG ATTTGCAAGT GGAGTTTTTT TTTTACNGGN
    CTAATTCATG TACCNATGGC TAATGGGNGG TTTTATTTTT GTTTACAGTN
    TNAAAAGGCT GCGTCANCTT TGANCAGNAA CGTCCCACCA GGGGTTNTTG
    CTAAAATTGA TNCCAGNGAG GAAACAAACA NAAAATTTGC ANCTCAATAC
    NAGGTNCAGG GTTTCCCAAC AATCAAAATT TTCAAAAACG GAGGAAAGGC
    TGTTCAANAA TACAACGGAC CTCGTAAANC TGAGGGTNTT GTACTTACTT
    GAAAAAACAA AGNGGACCTG CTTCTGCTGA AATTAANNCA NCTGANAATG
    CCTTNTGAGG TTGTNANTGA CAAAAANGGT NTTGNGGNAA NNCCAAAACA
    TGTTCTTNA

AT1G21750.1

Model type
Protein coding
Short Description
PDI-like 1-1
Curator Summary
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.
Computational Description
PDI-like 1-1 (PDIL1-1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Disulphide isomerase (InterPro:IPR005788), Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-2 (TAIR:AT1G77510.1); Has 31573 Blast hits to 17834 proteins in 2924 species: Archae - 337; Bacteria - 15428; Metazoa - 5451; Fungi - 1644; Plants - 2422; Viruses - 29; Other Eukaryotes - 6262 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21750.2

Model type
Protein coding
Short Description
PDI-like 1-1
Curator Summary
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.
Computational Description
PDI-like 1-1 (PDIL1-1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-2 (TAIR:AT1G77510.1); Has 30765 Blast hits to 17459 proteins in 2902 species: Archae - 337; Bacteria - 14753; Metazoa - 5498; Fungi - 1629; Plants - 2433; Viruses - 29; Other Eukaryotes - 6086 (source: NCBI BLink).
Link
InterPro Scan - TAIR