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15-0968-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21807 [Map]; Strand: c
      • AT1G01030.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -8093; Region: intergenic
      • AT1G01040.1 - [+] show detail - dicer-like 1
        Distance: -1339; Region: intergenic
    Flanking Genome Sequence: 15-0968-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AAGAAGAACA AAACAATATC TTAGTTTCTT CGGCCTCACT ATTCGACTTC 
    TATCTTCAAT ATATTTTCGC GTATTTTTTT ATTTGAATTA TTTGGTTTTT 
    GGTTAGTTAA CTAAACGAGC AACAGAACCA AGATCGAATT GCGTTTGCCG 
    TTTGGATTCA ATTATTGTAG AAAATTCGAC TTTTCCACAT CTTAAAGGCG 
    TAAGAATTGT ACCCTTGTTA GAAGACACAA AGCCAAAGAC TCATATGGAC 
    TTTGGCTACA CCATGAAAGC T

AT1G01030.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
NGATHA3 (NGA3); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G01500.1); Has 1380 Blast hits to 1379 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1380; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01040.1

Model type
Protein coding
Short Description
dicer-like 1
Curator Summary
Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.
Computational Description
dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Dicer double-stranded RNA-binding fold (InterPro:IPR005034); BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.2); Has 21958 Blast hits to 17420 proteins in 2982 species: Archae - 328; Bacteria - 11461; Metazoa - 3615; Fungi - 1668; Plants - 1373; Viruses - 45; Other Eukaryotes - 3468 (source: NCBI BLink).
Link
InterPro Scan - TAIR