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15-0994-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2318531 [Map]; Strand: w
      • AT2G05980.1 - [+] show detail - transposable element gene
        Distance: -598; Region: promoter
      • AT2G05985.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 15-0994-1 - 5-prime edge 
    GTTATCACCT TATTTATTTA TAATGTACAG AAGTTTTTGT TGCCAATATT 
    CGGAAAGCAA AAAGAAAAAA AACTTTTACA GGAATGAAAG TAACACAAGC 
    AAGTCTCTAG ATCTCTCACT AATTATTCTC GGATGATAGC TTTTCCTTTT 
    ACAGAATGAC AAAAAAGAGC AGTGCGCTGT CGTTTTAGGA ATATTAAAAA 
    GGTATGAAGA GGTTTTGGCC AACGAATAAA TTTTACAAAA TCATCGGTTC 
    AATTCGGACA CAAGAAAGAA GATTCACTGA AAGACGAACT TATGAGAACT 
    CTAGAGATCA CTAATTTAGG GGGCATGGGC TCTTATTTAG GATTACTGCA 
    AAGCCTAGGA GGCTCCAAAA CTAAGATATC TTCTTTTGTG AGAGAGCGCT 
    AACAAGAAAG AATTAATCGT TCGGCAAAAT TCTTATCTAG AGGGGGTAAA 
    GAAGTAATGA TTAAATCGGT AGCTGCTGCG TTGCCTACTT ATGTAATGTA 
    TTATTTTAGA TTACCAAAGT TGGTAACGTC AAAACTTACG AATGTAGTAG 
    CAAAACTTTG GTTGAGCTCA ACTGGAGAAA CAAAAGAAAT GCAATGGATG 
    GCATTGAAGA AGTTATGCGA GAGAAAATCT AATAGTGGGA TTGGTTTTCA 
    NGATGTGGAT GATATAATAC TGGGTTATTA NCGAAATAAA TATGGCGGGT 
    TAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2318409 [Map]; Strand: w
      • AT2G05980.1 - [+] show detail - transposable element gene
        Distance: -476; Region: promoter
      • AT2G05985.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 15-0994-1 - 3-prime edge 
    ACGATCTCTT TGCCTTAAGC CTCTTTCAGA GACTATCAAA CTTTCGAGGC 
    TGTCCATTAG TTAGAATCTT ATATCGAACC GATGTGACAC TTTACATTAT 
    CCAAAAAAAA CTATTTATCG CAAAAACCAA TTTTCTTTAG TAAATGTTCA 
    ATAAAAAGCC ACTCTATTCG ACCATAAGCT

AT2G05980.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.0e-42 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT2G05985.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
hypothetical protein
Link
InterPro Scan - TAIR