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15-1012-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23294502 [Map]; Strand: c
      • AT3G63020.2 - [+] show detail - Protein of unknown function (DUF3049)
        Distance: 0; Region: exon1 (CDS)
      • AT3G63020.1 - [+] show detail - Protein of unknown function (DUF3049)
        Distance: 0; Region: exon1 (CDS)
      • AT3G63030.1 - [+] show detail - methyl-CPG-binding domain 4
        Distance: -841; Region: promoter
    Flanking Genome Sequence: 15-1012-1 - 3-prime edge 
    CCGGAGATAT AGATGAAGAA CACCGCACGT CGTCAATGGC AGAGGAAGAC 
    ACAGCCTACG CATTCCCATC GACGGCGCTG GAGCACTCCT GTTGATTCCG 
    GCGGCGAACC TCTTCAAAGC T

AT3G63020.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3049)
Computational Description
Protein of unknown function (DUF3049); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410); Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63020.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF3049)
Computational Description
Protein of unknown function (DUF3049); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410); Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63030.1

Model type
Protein coding
Short Description
methyl-CPG-binding domain 4
Curator Summary
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational Description
methyl-CPG-binding domain 4 (MBD4); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 1 (TAIR:AT4G22745.1); Has 159 Blast hits to 159 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR