1. Home
  2. Mutant Lines
  3. 15-1152-1

15-1152-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10391709 [Map]; Strand: c
      • AT1G29715.1 - [+] show detail - pseudogene, putative receptor-related serine/threonine kinase, blastp match o...
        Distance: 0; Region: exon4 (NonCoding)
    Flanking Genome Sequence: 15-1152-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TTAGCTTATT ATGCGTTTTG CTTGGAAAAT 
    GGACCTTACA ATGTGAAACT CCATTTCATG GAGATTCAGT TTTCTGACCA 
    AGAACTATAC AGCCGTCTCG GCAGACGCAT ATTTGATGTC TATGTTCAGG 
    TAAAGCGTCA CTATATACTA AATGTTTTTT AACAAGCATA ATAGATTTGT 
    TCATTTGCTT TGTAAATTTT TCTTCTCTGT TAGGGAGAAT TGTTCTTGAG 
    AGATTTTAAC ATCAAAGAAG AGGCTAATGG GACACTAAAG CCTCTTGTGA 
    GAGAAATAAA AGCTGTTAAT GTGAGTGATC ATACGTTAGA GATTCGTTTT 
    TATTGGGCGG GGAAAGGGAC AACTCTCATT CCCAAAAGAG GAAATTATGG 
    TCCTCTTATC TCTGCAATCT CCTTGTGTCA CAGTAAGTAC TTATGACTAT 
    CTCAGGTCTC TGCATTTGTA ACCCTCACTC TTTATCGTAT TTCTCTCTTC 
    ACATTTGAGT TAATCATAAC TTCAAATTAT CACTGAACGC TAATATTCAT 
    CTTTTTCATA ATGTCAGGTT TGGAGCCACN ATGTGGAGGT CGTTTTGAAC 
    TANTTTGTNA AAAATGTTTT TNTGAAGCTC CAGNCNGGGC CGNGACCACN 
    CGGCNCCTAN NNNNNNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10432457 [Map]; Strand: c
      • AT1G29800.1 - [+] show detail - RING/FYVE/PHD-type zinc finger family protein
        Distance: -144; Region: promoter
      • AT1G29800.2 - [+] show detail - RING/FYVE/PHD-type zinc finger family protein
        Distance: -144; Region: promoter
    Flanking Genome Sequence: 15-1152-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTATTATAAA GTGTGACACT TCTCCCTAAT ATATGGGGTA AATGTATTCA 
    AAATAAAATT TTGGTGTCAA TTATATAAGA GATAGAAAAT AGGAGGACTA 
    ACGTATAATA AAGAGAAATA TGATGATTAT GTGGTCGCGT CTCAGAAAGG 
    TTAGCNGACG TTGTTAACTT GTAAAGTTGT TGTAATCGTT TTCCAGACGA 
    CATAGTCGTG TTTCTGAGTT TCTGAAATTT CTAAGAATCG AAAGATTGGC 
    TTCGCAATCG AGACAAGGAA CAACTCTAGA ACATGGTGAG TTTTACGCNT 
    TACGATTTTG ATTCCACTCA CAATTTTTCT TCTTTTTAAT TTCAATTTCT 
    ACGCGATCAT ACCAATTTCT AGGGTTATCA CTTTCATTCA AAATTCTTTC 
    GTGATTGTGG AGAATTGTTT TTAGCTGAAT CATTAAAGTA CAGATTTTTA 
    TGGAAAACAA GAAATTAGTC TCAAAGTTAT TTGTACAACT ATGATCGTTA 
    GCTTAATAGA CATCTCACAT GTGTTTGGTG TTTTAATTTT TGTATATCAT 
    TGTCTTGATA ACAAGTTAAA GGTCTAAACT TTAAGCTACC ANCCCGGGCC 
    GCGACCNCNC GTGCCCNTT

AT1G29715.1

Model type
Pseudogene
Computational Description
pseudogene, putative receptor-related serine/threonine kinase, blastp match of 67% identity and 2.6e-98 P-value to GP|8671882|gb|AAF78445.1|AC018748_24|AC018748 Contains a weak similarity to disease resistance protein (cf-5) gene from Lycopersicon esculentum gb|AF053993 and contains multiple leucine rich PF|00560 repeats and protein kinase PF|00069 domain. EST gb|T0-TRUNCATED-
Link
InterPro Scan - TAIR

AT1G29800.1

Model type
Protein coding
Short Description
RING/FYVE/PHD-type zinc finger family protein
Computational Description
RING/FYVE/PHD-type zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Ysc84 actin-binding domain (InterPro:IPR007461); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT3G43230.1); Has 3851 Blast hits to 3761 proteins in 321 species: Archae - 0; Bacteria - 225; Metazoa - 2022; Fungi - 664; Plants - 368; Viruses - 3; Other Eukaryotes - 569 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G29800.2

Model type
Protein coding
Short Description
RING/FYVE/PHD-type zinc finger family protein
Computational Description
RING/FYVE/PHD-type zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Ysc84 actin-binding domain (InterPro:IPR007461); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT3G43230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR