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15-1187-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30118846 [Map]; Strand: c
      • AT1G80070.1 - [+] show detail - Pre-mRNA-processing-splicing factor
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 15-1187-1 - 5-prime edge 
    ACTCTATGTC CCAGAAGGTG TGTTCGATAC CCTTACACTG GTATTTTATT 
    TCATGTTTAT ATTTTCCCCA TATTTATTAT TTTAAAAGAA GTTTCACTAA 
    TATGGTACCC CATACAGTTT TCCGCCACTT ACATCTTACA TACGTGTGTA 
    TTACAAAAAA ATGTTTTCTC AAAATGATAT TATGACCAAA AGAAAAAGAT 
    AATTCCTAGA TTTCTATCAT TTAAAGAACA AGAGCAATCA AGAGGCCCAA 
    ATATATATTG GGCTTTATAA GCCTGGATGA ACAGACGATG AAAACAGCTG 
    AAGCTAAAGG AAAAAAAATG TACCTGCTCC CAGGGCATAG GCATGTTCTC 
    CAAGAGCTTG AAAACTGCGT GAGGGACGAA TTTAAGGGCT CCAAGGTATA 
    CACGTTTGTC GTGACGGAAT TTCTTGGATG ACATATCACC ATGATCCCTG 
    AAGTAANAAA GAAATCGCAG CTTCAGTCTC AAAATAAGTA AATCCTAACC 
    AAATCTTANA AACCTAGCCA GAAAATAATT ATCAAGTAAA CTGTATTTCG 
    AAATGGTNGA GAAAGAAGAG AAGAAAACTA GCCTGATGAT CTTCCTGACG 
    TGCTCAGGTG GCATGTCCTC CTTCTGAGTT TCAACGAATC CAAACTTCCT 
    CTTGTCGCCG TACCGTTTGG AATTTAGCTG CATCCATTTT CGGGCCT

AT1G80070.1

Model type
Protein coding
Short Description
Pre-mRNA-processing-splicing factor
Curator Summary
a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality.
Computational Description
ABNORMAL SUSPENSOR 2 (SUS2); INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding (InterPro:IPR019581), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), PROCN (InterPro:IPR012592), Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding (InterPro:IPR019580), PRP8 domain IV core (InterPro:IPR021983), PRO, C-terminal (InterPro:IPR012984), RNA recognition motif, spliceosomal PrP8 (InterPro:IPR019582); BEST Arabidopsis thaliana protein match is: Pre-mRNA-processing-splicing factor (TAIR:AT4G38780.1); Has 828 Blast hits to 729 proteins in 312 species: Archae - 0; Bacteria - 2; Metazoa - 333; Fungi - 220; Plants - 69; Viruses - 2; Other Eukaryotes - 202 (source: NCBI BLink).
Link
InterPro Scan - TAIR