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15-1484-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8377954 [Map]; Strand: w
      • AT1G23680.1 - [+] show detail - Domain of unknown function (DUF220)
        Distance: -798; Region: promoter
      • AT1G23690.1 - [+] show detail - Domain of unknown function DUF220
        Distance: 0; Region: exon4 (CDS)
      • AT1G23690.2 - [+] show detail - Domain of unknown function DUF220
        Distance: 0; Region: exon4 (CDS)
      • AT1G23690.3 - [+] show detail - Domain of unknown function DUF220
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 15-1484-1 - 5-prime edge 
    GGNCANCGCA NGGCGNCCNA CGAACAGTGN CCTATNGNGA GCGCNGANCA 
    CCNTGCCNGN GNTGGGAGAC CACNNCTGCT GTATGANTGA GNAGACCACG 
    CTNNGCNNAA NANANANTCA NANCNCTCAA NNATTATNGT GATTAATACC 
    ACATTTGAAT CATAAAAATG TAAAGAGAAA AACCAAAAGT TGGCGCCCAG 
    TCTCGTTGTC GATCCTGAAG AATGGAAAGT CGTTCGGATT AGCGAACAAA 
    TCATAGACCC CTTCCGGAGG CAATCCTACT GTCAACTCTA TGTGCATGTG 
    GCAAAGACCC TTTTTTGTTG TCACCTTCAA ACATGAAAAT ATAAGAAATC 
    TTTCATATTT TTTTTTTTTA AATTNTTNNA CNAATTCNTT TNAAAAAAAT 
    AAATTTTNAA GTNTTACCTN GACCTTAGGA GGAGCATNAT ACCAGGGTTT 
    TTTTTTTTNN GNAGNTNTCN AAAGTTTTNC TNGNTTTTTA GCNNNAGTTT 
    TGTAANAANA AAAGGCCCGG NTNATNANNA TAAATNCTTT GGGGNTGAAN 
    NAAANNAAAN ATTTTAAAAT NTTTGGGATT ANNNTAAAAA AGNAAAANAN 
    NNCCATAAAA ANTNNNATAA TNANAANTTG TAAGNTNNTN NNTTNTTTAA 
    CCAAAANAAN TTTTTTNTTT NNGNAANTAA AANGGAAATT GCCNNAAGGG 
    GGNGGGGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24029648 [Map]; Strand: c
      • AT5G59640.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    2. Chromosome: 3; Position: 14456368 [Map]; Strand: w
      • AT3G42305.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 15-1484-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATTTACTCTA ATTGTTGATG AAAACCAAAA AAACTTTAGA GTAGCTTCCC 
    TATATCTCTC AAACTAATCA ATAACTTTTT CATTTGGACT TTTTACAGCT 
    TTTTTTGTAT TATCAAAAAC ATTGTTTCCA AAACTTGAAG AAGTTTTTTT 
    ATTTAATTTT TTGTTCACAA GTTTTTATTT TTGTATTAAA ATTGGTAACA 
    CCTTATGTCA CAATCTATG

AT1G23680.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF220)
Computational Description
Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.2); Has 82 Blast hits to 71 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G23690.1

Model type
Protein coding
Short Description
Domain of unknown function DUF220
Computational Description
Domain of unknown function DUF220; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1); Has 139 Blast hits to 124 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G23690.2

Model type
Protein coding
Short Description
Domain of unknown function DUF220
Computational Description
Domain of unknown function DUF220; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1); Has 139 Blast hits to 124 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G23690.3

Model type
Protein coding
Short Description
Domain of unknown function DUF220
Computational Description
Domain of unknown function DUF220; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1).
Link
InterPro Scan - TAIR

AT3G42305.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 1.1e-101 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon="Shooter" (Zea mays)
Link
InterPro Scan - TAIR

AT5G59640.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.1e-159 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon="Shooter" (Zea mays)
Link
InterPro Scan - TAIR