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15-1643-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19522571 [Map]; Strand: w
      • AT5G48150.1 - [+] show detail - GRAS family transcription factor
        Distance: 0; Region: exon3 (CDS)
      • AT5G48150.2 - [+] show detail - GRAS family transcription factor
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 15-1643-1 - 5-prime edge 
    TTTCCAAGCA CACGAGGCGA CCAGATCTCG ATGCATCCAA CCAAGATACA 
    AGGCTCCATC TCTTTCTTCT AGCCTGTACT TGTCCGAGTA GTTCCTAAGC 
    AGACTTTTAA TGGTTGAATT

AT5G48150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Curator Summary
Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway.
Computational Description
phytochrome a signal transduction 1 (PAT1); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCARECROW-like 21 (TAIR:AT2G04890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G48150.2

Model type
Protein coding
Short Description
GRAS family transcription factor
Curator Summary
Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway.
Computational Description
phytochrome a signal transduction 1 (PAT1); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCARECROW-like 21 (TAIR:AT2G04890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR