Home
Mutant Lines
15-1678-1

15-1678-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 1550308 [Map]; Strand: w
- AT1G05300.2 - [+] show detail - zinc transporter 5 precursor
  Distance: -2510; Region: intergenic
- AT1G05310.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: 235; Region: intergenic

CCGGCGGCGG TGCTCTCCGT TGTGATCGCA TGTCGTATGT TGATATATTG 
AACCGAACCG GTAAGGTCCG AACCCGGATC TATTTTATTG GTTTAGTAAA 
ATTANNGTNC CNNCCATTGG ATNNNCCTTG CNGTNNACAA CAATTAATGT 
ACCTATTTCT AATTTGTTCC TAGAGACTTT TCAATTCGAT TGTAATCTTT 
ATAACTGGAG GTTATGTATC GTATATATAG AGATAATTTC TTAACCATTT 
TGAACTTGAA AACCTGCAAT GATTCAGTTT AAATCATTGG TAAAAATTGC 
ACTTTCTCCA ATCATAATGT TCCGATTCAA AATATATAAA AAAAGAGTAT 
ATTCCAACGA GTTTTGATTA ATAGATTTCC TTTAAAGGTC AGAAAACTGT 
AACCATTGAT CTCCATCAAT ATAAGACGTG TTAATTAATA GAGCAACTTG 
AGTCTCATTA AGCT

3 prime edge [+] show sequence

Chromosome: 1; Position: 1550193 [Map]; Strand: w
- AT1G05300.2 - [+] show detail - zinc transporter 5 precursor
  Distance: -2395; Region: intergenic
- AT1G05310.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: 350; Region: intergenic

NCCGCCGGCA GCATTCGCCT CCGATATATG ATCTGTTCCA CTTAGATTCA 
CACTCGATAT CTCGAACAGG CGAAGAAATC GTCTATCTCT CTTCTCAATA 
GATTTCCTAA TTTTTGTCTC TATCCGATTT TGTTTCCGTA AAGAAGATAC 
ATCTTTTTGT GTATATTGTC TTGTAGAAAG AAACATTGAT TAAGTAGAGA 
AATAGGATAA ATCAATCTCT GTACTTAAAA CANAAGTATC ATATATCATT 
CGTCACAACC ACATAAAGTT GTTGAAACTC AGTTTCAAAG TTNGAATGAT 
TAATTATGCA GTCTTCAACT GCTGACTTTT GAGAAGATTA TTGATTTGTC 
TCAGGAAAAC AAAATTNTCA AAGTGATTCA ATATTAAGTG GCCCATTCAT 
TAATCATCCG ACGGCTTTCA CGTTACATAG GGTTTGGCAC TCATATATGG 
ATGGGCTATA TGCTACTTGT CTCGTCTAAC TTGGAAGANA AGAAAAAAAG 
TTTTTGTCTT CTAATGAACC AATGGATATC AAAACTTGGA TTNTGACTAC 
ATGCAAACAT TACTTGAGTA NTAAGTATCA AAAACTTCAT TACCGAATCT 
ACCAG

AT1G05300.2

Model type: Protein coding
Short Description: zinc transporter 5 precursor
Curator Summary: member of Fe(II) transporter isolog family
Computational Description: zinc transporter 5 precursor (ZIP5); FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 3 precursor (TAIR:AT2G32270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G05310.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 4576 Blast hits to 3466 proteins in 439 species: Archae - 11; Bacteria - 724; Metazoa - 994; Fungi - 355; Plants - 1773; Viruses - 6; Other Eukaryotes - 713 (source: NCBI BLink).
Link: InterPro Scan - TAIR