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15-1840-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17974549 [Map]; Strand: w
      • AT4G38380.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-1840-1 - 5-prime edge 
    AAGAGTAACA AAGGGATAAC GCAACACCTC AATAGCCTTA CGGGAGTTTG 
    TCCAGTGAAG AGCAAGAGTC ATCTTCTTCC CCCAACTTGA CGACACCGCA 
    ATCAGGGTTA GTCTGGCTCT TGCGGCGAGT AACAAAAGGG AACATGGGGT 
    TTGGATTGGT GTGAAGGGAG CATTTTTGGG GGGCAGAGAC ATCATTGATC 
    CGAGATAGAG GTAGAAAAGT CCCTTGTTGG ATTTTGGGTT TGGCAAAGCT 
    AGAGTTCCTC CTATTCGCCA AGGGCAGCCC ACCACCCACT ACTACTCTAC 
    TGGACTCCAT CACACACAGA CACTGCAAAA ACGAAACTTT ACTAGTTCGT 
    CTATATATAA TTAGAACCAA AAGAAAGAAA GAAAGCT

AT4G38380.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G38330.1); Has 13476 Blast hits to 13444 proteins in 2154 species: Archae - 331; Bacteria - 10835; Metazoa - 81; Fungi - 150; Plants - 389; Viruses - 0; Other Eukaryotes - 1690 (source: NCBI BLink).
Link
InterPro Scan - TAIR