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Mutant Lines
15-2009-1

15-2009-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 19432935 [Map]; Strand: c
  - AT2G47340.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT2G47350.1 - [+] show detail - HIT zinc finger ;PAPA-1-like conserved region
    Distance: -856; Region: promoter
  - AT2G47350.2 - [+] show detail - HIT zinc finger ;PAPA-1-like conserved region
    Distance: -856; Region: promoter
Flanking Genome Sequence: 15-2009-1 - 3-prime edge
```
CCGATGTGTC GACTTGTTCT GATAATTTCG TGGATATTCC TGATGTTGAT 
TCGCCGACGG CGTCTCTTGA TGATCTTATG AAGAAGCT
```

5 prime edge [+] show sequence

Chromosome: 2; Position: 19432819 [Map]; Strand: c
- AT2G47340.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT2G47350.1 - [+] show detail - HIT zinc finger ;PAPA-1-like conserved region
  Distance: -972; Region: promoter
- AT2G47350.2 - [+] show detail - HIT zinc finger ;PAPA-1-like conserved region
  Distance: -972; Region: promoter

CACATCGGAG ATGGCTGCAC TCAATACCGA ATCCAATCTC CCGTAATCTC 
CCTCCTCCAT GGCCATCTTC GCATCTTCAA GACCTGAGAT CAACGAATCG 
TAATTCTCGA CGCAAACACT CATCGCCTCT TTCACCGGCA TCGGCGTTTT 
CCTATCTTCC ACCACACGTT TCGCGTAATC CAAAGTCGCG TTCGCTTTTT 
TTAACAGAGA TTCAGCTTCC ATTCGCATCA CATCCTTAGG AGCAATTCCT 
CCGTCTCCTC CTTCTCCTTC TGCTNGTTTC TGTAGATCCG GGAGAATCGC 
GGCGATGCAT TCGTNGTTGT AGTCTGTGTT TTTGCANAGA TCTTTCGCCG 
TCGTGTCGAT TTTCATTGAC GAGAAATCGA ATTTGTTTAT ATGTTCAAAT 
TTAGGAGCTA GATCAGCTAT GTTTGTGACA GAGTCGAAGT NGANGTCTAT 
GTCTTCTTGG GATGGTCCGG GTGCGGAGAC TGCCGCCGTG GGAGCTAAAT 
NAGATCCGGG GTTAATGTCT TCAGAGGTGG GGGATGGTGC AGAGGCTGGG 
ACGACCGANA TTGANGATAC GGGGTGGTTC NATGAGCCGA AGGGGTCAGG 
GTGAGGAANC AGGGACTTGG GANGTCTTCT TTTACTGAAC NGGCCGGNGG 
GCGNGGACCN TTGGATACNC CCGGAGAATG NNTACNACCN ACNAGNAACT 
CCCGATNANG ANAA

AT2G47340.1

Model type: Protein coding
Short Description: Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description: Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G02550.1); Has 153 Blast hits to 151 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 4; Plants - 145; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47350.1

Model type: Protein coding
Short Description: HIT zinc finger ;PAPA-1-like conserved region
Computational Description: HIT zinc finger ;PAPA-1-like conserved region; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529), PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: PAPA-1-like family protein / zinc finger (HIT type) family protein (TAIR:AT3G06660.1); Has 3160 Blast hits to 2461 proteins in 330 species: Archae - 7; Bacteria - 184; Metazoa - 1235; Fungi - 390; Plants - 202; Viruses - 26; Other Eukaryotes - 1116 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47350.2

Model type: Protein coding
Short Description: HIT zinc finger ;PAPA-1-like conserved region
Computational Description: HIT zinc finger ;PAPA-1-like conserved region; CONTAINS InterPro DOMAIN/s: PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: PAPA-1-like family protein / zinc finger (HIT type) family protein (TAIR:AT3G06660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR