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15-2024-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1974923 [Map]; Strand: c
      • AT4G04120.1 - [+] show detail - transposable element gene
        Distance: -621; Region: promoter
    Flanking Genome Sequence: 15-2024-1 - 3-prime edge 
    TNTACNAAAT NCCCAATTCA CANTNTGNNA TAAACNTNTC GAGATCGCAG 
    CTGGCGACNC ATNNAGCAAC NACCAGGTTN NNTGTACCAT GGATTTATAG 
    AANCATCTNT NANACNCAAC NATGGCNCNG CGGGCATGTA CTGGCTTCAA 
    GGCGANGAGC NCGAGATGAN AGNACATACA ACATGTCCCC ACCCACACTC 
    CGTNCTGGTC TTCTCTACTT CTCCTCTCTT CTCTCTTACT ATTGTAAAGG 
    CTAAAAGCCT AAACAATTTA GCAATGGATT TGAGAGTAAA ATGCTNTTTA 
    TCGTTAGTGG TATTTAATGG AAATTTGAAT AGGCACCCAA AGTCTTTTAA 
    AAGGTGTTGA AATCANGACN ATCGAGTTCA ATGCTTATGT AAACCTAANG 
    AGATAATTAC TCTCTTTGAN ATGAANCNTG ATNNTTNGNC CTTTNTTTCC 
    CACTNTGCCA ATNCTTANGN CCTGGATAAT ATTNTCNTTC ANTAGAANGA 
    GAGATAATAA CTNTAAGAAT ANTCNTATAT TGNNNTTATG TCCTCATTTT 
    ATTTCNAAAA NCCTCTTTGG AAAACCGATN GTNAANGTAA ANAGTAATTN 
    TNACCGNCTA GGNTCTCTCN ATATATGTNN AAGCANCGTT CCGTTTNCNA 
    CNTATAGNCC CCNCNNGCCN NNGTNCTTNC GNANNNCNNT TTGGCGACAT 
    CANNNTAACN ACCNTTATTT NNATCGGNNN NNTATCCNNN ATCGNGNAT

AT4G04120.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.8e-19 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR