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15-2082-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14822946 [Map]; Strand: c
      • AT2G35155.1 - [+] show detail - Trypsin family protein
        Distance: -981; Region: promoter
      • AT2G35160.1 - [+] show detail - SU(VAR)3-9 homolog 5
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 15-2082-1 - 5-prime edge 
    CGCCTACTCA AATTGGGTTA ATTTGGCATT GTCCTGCAAA ACAAAACTAA 
    ACAATCAATT TTAATTAAAT TCTGTTTTCT CTTTTCAAGG ATTCAATTTT 
    TAATAACTCA GTCAAATAAG TCACTCACAT AATTCTTATG AACAGAGTCC 
    TAGCATGCAT CTTTGGCTCT GGCTCTATAA CTTCTTCAAT TCCTATTTTA 
    TACAAGTTCA TCAAGATTAA TTTATATTGA TGATGATTTA GGGTTTTAGT 
    GGATCTCTTT TTTTTTTTTT NGGGNAAAAA NNNNNCNNCC CGGGNCNGGN 
    ANCNCCCNGG NCNCTNNAAA

AT2G35155.1

Model type
Protein coding
Short Description
Trypsin family protein
Computational Description
Trypsin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: Trypsin family protein (TAIR:AT5G45030.2); Has 136 Blast hits to 136 proteins in 33 species: Archae - 0; Bacteria - 53; Metazoa - 0; Fungi - 2; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35160.1

Model type
Protein coding
Short Description
SU(VAR)3-9 homolog 5
Curator Summary
Encodes SU(var)3-9 homologue 5 (SUVH5). SUVH5 has histone methyltransferase (MTase) activity in vitro and contributes to the maintenance of H3 mK9 (methylation of histone H3 at Lys-9) and CMT3-mediated non-CG methylation in vivo. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.
Computational Description
SU(VAR)3-9 homolog 5 (SUVH5); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: maintenance of DNA methylation, histone methylation, regulation of gene expression, epigenetic, response to chitin, chromatin silencing by small RNA; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 6 (TAIR:AT2G22740.1); Has 5295 Blast hits to 5101 proteins in 461 species: Archae - 0; Bacteria - 388; Metazoa - 2414; Fungi - 548; Plants - 1120; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).
Link
InterPro Scan - TAIR