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15-2175-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 615807 [Map]; Strand: c
      • AT2G02330.1 - [+] show detail - pseudogene, similar to P0443G08.20, blastp match of 37% identity and 7.2e-16...
        Distance: -1215; Region: intergenic
      • AT2G02340.1 - [+] show detail - phloem protein 2-B8
        Distance: 281; Region: intergenic
    Flanking Genome Sequence: 15-2175-1 - 5-prime edge 
    GTTCAAAGAA TGATTTGATG GTTCTGATTA AAGGACATTA ATGCATATAA 
    GGGTATTTTC GTAAATATGT GTGGGTGACC TCAAAAAACG AGTCTTTTTC 
    TTTTGAATAT TTTAGCNGGC AAAGACGCNT TGTAGAGACA AAACACGGTT 
    TTGAGTCTTT TCTTTGACTC AAGCAAGACT CTAGAGGCAA AGGCAGAGAT 
    ATTTGTGGTT GTAATGTTTG TGATTATAAT GTACATGATT CTTTGATGAA 
    CAAAATTCGA TACTAAAAAC ATAGTGTTTT GATCATCTAA AACTCTAATG 
    TCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 615913 [Map]; Strand: c
      • AT2G02330.1 - [+] show detail - pseudogene, similar to P0443G08.20, blastp match of 37% identity and 7.2e-16...
        Distance: -1321; Region: intergenic
      • AT2G02340.1 - [+] show detail - phloem protein 2-B8
        Distance: 175; Region: intergenic
    Flanking Genome Sequence: 15-2175-1 - 3-prime edge 
    NTTTGANCTG CANCTACACT TGGNCTGCAT TTANCAATAG GGCAACANCN 
    TCCCCTACNA GGACAAATTC CGGAANATTA GCTAACNGTA NCTTATCACN 
    CACACAACGG GAATACACGT TNTATACATT CNANAATGAC CGNNTTCACT 
    CCATTGCNTA ACCAGTTTAA CAACNATNCC AATTGATNNN NNGTTGATTG 
    ATNTAAACCA NCATTCTCGG CGCCTTAATT ACGNGGATAT TCNTAGGACG 
    GATTTCAATT CCTTGNATGA TCAANCCACC GTTGNCAATG ACGCTGCTTA 
    GCCTCTAAAG CAACCATGTN AATTTCGTCN TCGTTCAATA NTNCTCCTTC 
    ATTGAANAAT TCCCNAATCT TTATCTCCNT NCACCCATNT TTACTCCTCT 
    CTGGTTTNAC TAGGTTCTTT ACCCTGTCTC TCCTTCGAAA CTGCTCATCC 
    ATAGTCCGCA TCAAAGCATA CGCATNTTCG ACAAGATTTT ACTANTTTCT 
    GTCCAACCAC TCCNACTNCA ACTTCTCGGC TANATTCCTN AAAGNCCCTA 
    ACATNTGTGC ANTNTCTTGT NCACAATGTT CGGCCGCGTT TCGANGTNGT 
    NTGTANANAG CACACCGACC TATTTNATTN TNGNCCCNGA NTNCNAGNCN 
    AACCATACAT TCAAGTNNNT ACCGCNTCNT GTTTCAAAAN NTGNTTANCG 
    CCTGGTCGNN ANTCTTTTCA NCTCNGNANA NNCATNCNNA ACGAGTCTTT 
    TAAANCAAAN AAANTACNTC AANACCACNA

AT2G02330.1

Model type
Pseudogene
Computational Description
pseudogene, similar to P0443G08.20, blastp match of 37% identity and 7.2e-16 P-value to GP|28812128|dbj|BAC64996.1||AP004461 P0443G08.20 {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR

AT2G02340.1

Model type
Protein coding
Short Description
phloem protein 2-B8
Computational Description
phloem protein 2-B8 (PP2-B8); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-B7 (TAIR:AT2G02320.1); Has 560 Blast hits to 546 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR