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15-2311-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18204654 [Map]; Strand: c
      • AT4G39060.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat su...
        Distance: 20; Region: intergenic
      • AT4G39070.1 - [+] show detail - B-box zinc finger family protein
        Distance: 201; Region: intergenic
    Flanking Genome Sequence: 15-2311-1 - 5-prime edge 
    GCTCCAACAC TAAAAACTGT GAACTTTTTA AAAATAAAAT CGTAAACTAA 
    TACAATGTAG TATCATAACT TTTGGATTAA AAAACACAAG ACTAGGTGTG 
    TGTTTGTGTA ATAAAAAAAC AAAACTGGAA AGCATATTGT TGACTATGTC 
    GAAAATTTCA CACAATCCCA GAGTGTATAG GACACAGGGA CTGTAAGAAC 
    AACATCAGCC CACTCAATCT GACCCGAAAC TTCATCATTG AGACTCTTGT 
    CAAGCAAAAT CACAGCACAC CAAATTTTCT TGGTTTGATC AAGAGGAGAC 
    AAGGCAGGAC TGTCCCAAAA GAGTAGAAGC T

AT4G39060.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G19250.1); Has 375 Blast hits to 365 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 367; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39070.1

Model type
Protein coding
Short Description
B-box zinc finger family protein
Computational Description
B-box zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: response to karrikin, response to chitin, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: salt tolerance homolog2 (TAIR:AT1G75540.1); Has 1892 Blast hits to 1305 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1793; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR