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15-2346-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7549204 [Map]; Strand: w
      • AT1G21540.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-2346-1 - 5-prime edge 
    GTCTCCGCTG TAGAACCATC CGTCCTCTCT CATACACGCT GCGGTTCCTT 
    CAGGGTCTTT GTAGTAACCA AGCATAACCG AACCGCCTTT TAAAACGATC 
    TCTCCAACGG AAACACCGTC GTGTTCCACA CTCTTCCCGG TTCTCGGGTC 
    CCTAACATCA ACTTCCGCGA ATCCGATGGT TCTTACTCCT TGTCTTGATT 
    TCAGTCTTGC TCTTTCCAAT GGATCAAGAT GATCCCACTC AGCCTTCCAA 
    GCACATGACA CAACCGGGCC TCCGGTTTCC GTTAAACCGT ACCCATGACC 
    GACGTTGAAA CCTAGGGTTT CTGCTCTTGA GATGATGGCT GCTGGAGGTG 
    GAGCTCCGGC GGTCATAACC TGATTTCAGA AACACAAAAC AGAGTTTATT 
    CAAAAGTTCA CCAAATGATT TTCAAATGGA AGTTTTTAAT AAACCAAACC 
    GGTATTGAAC ATGGATGTAT TTAATAATAC CTGAACCGGG TTCTTTAGCG 
    GNTTACGAGA CGGGTAGTTG GTTAGCATGT TGAGAACCAT TGGNGCGGCA 
    CACATGTGAG TTACGNGATG CTTATCGATC AAGGGATTAG ATAGTCGGGG 
    GCGNTGGACT CTACGGGTGC ANACNGTNGG TGGCTTCAAC CGCCGCNGTG 
    CCCCATNGTA TACCCNNAAC CANTGNGGGG GAACTTGGGA GANANCAAAA 
    GGNAANCGGC C

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7549081 [Map]; Strand: w
      • AT1G21540.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-2346-1 - 3-prime edge 
    CGTAGGAGTT ATACATGAAG ACGGTTACTT GGAAGTTAAA GACCGGTCAA 
    AGGATGTGAT CATATGCGGA GGAGAGAACA TAAGTAGTGC CGAGGTTGAG 
    ACGGTTCTGT ATACAAATCC AGTAGTTAAA GAAGCCGCGG TGGTGGCCTA 
    AACCGGATAA GATGTGGGGA GAGACACCGT GTGCTTTTGT GAGCTTGAAG 
    TATGATAGTA ATGGTAATGG GTTGGTGACT GAGAGGGAAA TAAGGGAGTT 
    TTGTAAGACG AGGTTACCTA AGTATATGGT TCCAAGGAAA GTAATTTTTC 
    AGGAGGAGCT TCCAAAGACT TCTACTGGAA AGATACAGAA GTTTCTTCTA 
    AGACAAATGG CTAAGTCTCT GCCTTAAAGA TTCGCTTGAG TTATTGAGGA 
    TATGAAGAAG AATCTCCAAG AATGAAGTAA AGAATGACAT TTATTTTGTG 
    TTGTATTATT GTTTTACCCT TAAGAAGGGA TTAGTTTCCA AACAAGCT

AT1G21540.1

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Computational Description
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21530.2); Has 76629 Blast hits to 70171 proteins in 3593 species: Archae - 1132; Bacteria - 50179; Metazoa - 3309; Fungi - 3660; Plants - 2281; Viruses - 1; Other Eukaryotes - 16067 (source: NCBI BLink).
Link
InterPro Scan - TAIR