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Mutant Lines
15-2494-1

15-2494-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 3432792 [Map]; Strand: w
- AT5G10870.1 - [+] show detail - chorismate mutase 2
  Distance: -330; Region: promoter
- AT5G10880.1 - [+] show detail - tRNA synthetase-related / tRNA ligase-related
  Distance: 0; Region: exon1 (CDS)

GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCTA CTACGAGTCT GTAAAGGGAT GCTACATTCT 
CAAGCCATCA GGCATCAGCG ATGAATATTT GGAACGTTAT ACNAACGTTC 
TTCAACGCTG AGATTGAGAA GATGAAAGTG GATGAATACT ATTTCCCGAT 
GTTTGTAACA CGTGATTCTC TTGAGAAGGA GAAAGACCAC ACTCAAGGGT 
TTGCTCCAGA GGTTGCTTGG GTTACAAGAG CTGGTGGATA AGAGGACACA 
GGGACCTCCC TTTGAAGGTT AACCAGCCNG GNCCGGCNAC CACGCNTGNC 
NNNANTTTAG CGACCCTACC CCATTTATCA GGAGCCGTGA GTTCCTTTGG 
CAAGAAGGAC ACACTGATTT TGCTACCAAA GAAGAGGCTG ATGAGGAGGT 
GCTTGATGTT TGAACATCTA CAGCCGCGTG TATGACTCAT GGAGATGACA 
AAGGTTNAGT ATTCCCTCCT AAAGTGGCAC CTGTNCAAGT TGTTGTAATC 
CATGTTCCCA TCAAAGGCGC TGCTGATNAT CANGAACTTT GGGATGCTTG 
NGAAGCTGNN GAATCCNCCT TGCTTGGGGC TGGAATCCGN GCTGANNCNN 
ATNTNCCCGA NAACTNTTCT NGCGGATGGA ANNNTNCCGG ATCAAGAANC 
NANNNGGNGG NNNCTTNGNG AANGNAACNG GACCTGAANN TNTGNNCANG 
ANAGGGNNNN GANNNNGACN

3 prime edge [+] show sequence

Chromosome: 5; Position: 3432789 [Map]; Strand: w
- AT5G10870.1 - [+] show detail - chorismate mutase 2
  Distance: -327; Region: promoter
- AT5G10880.1 - [+] show detail - tRNA synthetase-related / tRNA ligase-related
  Distance: 0; Region: exon1 (CDS)

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
TTATTCAACC AATTCACCAA ATCTACAAGC CTCGGAATAC CACTTCCCAA 
AATCTTCATC TTTCTTTGCA GTGATTCCAA GACGAGTTTC TTTCACCATC 
TCTTTCACTT TCCTAGAGGC TTCTCGAGGA ATTGCTTGAC TTGTCACACA 
ACCTTAGAGC GTAAGCCAGA AAAATAATTC AGAACAATAC AAATAAACCC 
CAGCTATTGT GAGAAGATAT AATAATTCTT TATGGGCCAG TCGGTGAATA 
TAGTTGGGCC CAAATCATCG GATGTGGATC TTGTTTTGAT TTCAACGCTT 
TCGTTTTTTT TTGTTTCTGT TTTCCTTGAT TGAGGAAGCA ATCTATGCAA 
AGAGGTCCAA AACACTTTAG CATTGAGGAA GAAGAAGAAG AAAGCT

AT5G10870.1

Model type: Protein coding
Short Description: chorismate mutase 2
Curator Summary: Encodes chorismate mutase AtCM2.
Computational Description: chorismate mutase 2 (CM2); CONTAINS InterPro DOMAIN/s: Chorismate mutase, type II (InterPro:IPR020822), Chorismate mutase, AroQ class, eukaryotic type (InterPro:IPR008238); BEST Arabidopsis thaliana protein match is: chorismate mutase 3 (TAIR:AT1G69370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G10880.1

Model type: Protein coding
Short Description: tRNA synthetase-related / tRNA ligase-related
Computational Description: tRNA synthetase-related / tRNA ligase-related; FUNCTIONS IN: proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: prolyl-tRNA aminoacylation, translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Prolyl-tRNA synthetase, class IIa, prokaryotic-type (InterPro:IPR004499), Prolyl-tRNA synthetase, class II, C-terminal (InterPro:IPR016061), Anticodon-binding (InterPro:IPR004154), Prolyl-tRNA synthetase, class II (InterPro:IPR017449); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT3G62120.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR