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15-2500-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1745084 [Map]; Strand: w
      • AT1G05805.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-2500-1 - 5-prime edge 
    GTCGTCGGAT AACTTCATCG GTAACTTCTT CACCGGGGCT GCTGACTCAT 
    CCTCGCTGAG ATCCGATTCG ACGACTTGTG GAGTCAACAA CTCATCCGAC 
    GGACACAAAC AGCTAGGCAA TAACAATAAT AATAATAGTA ATAAAGATAT 
    CTTCCTCGAC AGATCCTACG GTGGATTCAA CGAGATCTCG CAACAACACA 
    AGAGCAACGA CATCGGANGA GGANACANNN NNCGANNTNN ATGCCTACNT 
    ANACAANGTA GAGCNCCCAT NACCTTGTTG GCNNACCGNG CCTNACATTA 
    AANCANGTAN NNCNTNTTTT ANNCTGAAAT GGAAACTGCG NNNANATNNN 
    TATNNATNCN GACANACNAN GANANTNNTN NNAAAACNNT CCTTCCTNAG 
    ANTCACGCTC ANAANNNNGN ACNNNNNANA NNAGCGATCN ATTTATCAGA 
    NATCNANNNA NNNATCGGGG NCGTAAANAN CCCGTTNTCC GGTGAAATGA 
    AAATCTAACC ACGAGGGGTA TTTTCGGTAT TTCTCACTGG GAAGTATCTA 
    GTTTCTTACA AGTTAATTTA ACGACTATGT ATATAAAATA AGTGACATTG 
    NGAGCTTTGA TATTTAGGGG TCGNNGCTAA ATTANCTTGG TNGGNACTTG 
    NGCAANACGT GATCCTCGNN TTTTNNGNAT GACNAAAATA CCATTNGATC 
    CCTACCNCGN GCTG

AT1G05805.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G43140.2); Has 2662 Blast hits to 2007 proteins in 137 species: Archae - 2; Bacteria - 54; Metazoa - 424; Fungi - 144; Plants - 1472; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).
Link
InterPro Scan - TAIR