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15-2651-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6670812 [Map]; Strand: w
      • AT1G19290.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 1849; Region: intergenic
      • AT1G19300.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: 325; Region: intergenic
    Flanking Genome Sequence: 15-2651-1 - 5-prime edge 
    CCTCGAGATA TTTTACGTTA CTATTTGCAA AATTATTTGC TACTATCCAC 
    GGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6670696 [Map]; Strand: w
      • AT1G19290.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 1733; Region: intergenic
      • AT1G19300.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: 441; Region: intergenic
    Flanking Genome Sequence: 15-2651-1 - 3-prime edge 
    TCTCGAGGAA AGACATGTTC TTGCAGAAAA ACATATTACA AGTAATTCGT 
    AACGTTGTGA GAAAACATAT ATGCTTGAAG AAATAGCAAT AAACCAAGTA 
    ACAAAGAAAT TCAGAGTCAC CAGCGACGTG CNTTGTTTGA ATCATATTAG 
    ATCCATAATG TTAATTGATT AATTAGAAAG TCGACGAAAT TAAGTCATTA 
    GATTAAAGTT TTAGGAAATA ATTGGAGACA GAGTGTCGGT GGTCCGAGCG 
    AAAGAAAGGA AAAGCACGAG CAATGTCCCA TCAAACATTT ATGTACAGTC 
    ACTACAGTTT TGACCTTTGA GACTCTTTTC ATTTTTCATT ATATTTTTTT 
    GTTACCTTTT TAAAGAAACA ATTCACTCTA CATTTCTTTT TCACCTCCTC 
    GTAATCTCTT AAAAAATTAA TTTTCCTCCA AATCCACTAG GATATATGTA 
    GTATAAAGAA AAATTAGGAG TAAATATCTT TCGCATTTTG ATGGTAAAAG 
    ATATTCCACT AAGTGGCAGA TTCTGCTAAG TTTTCTACAA GTGTTACCAT 
    TTAACAATAT TGTTCTCTAT CAAAAGTAAT ATNTACTCAC TCTATTCCAG 
    ATTAATCCAA TTTTGTAACA GGTTGATATT AAATACATCC ATTTTTTTTT 
    GGGGATTAAC AATTTTTTTA AACCTCTAAC CATTNTTTGN TTGGCTTNGG 
    NNCTNCATTT NTCATCCNTA NNTAANTCCC ATGNTTANAA ACCCACCAAA 
    ANGNNTNTTT TNNAAANTTT

AT1G19290.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G19300.1

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.
Computational Description
PARVUS (PARVUS); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 2 (TAIR:AT3G50760.1); Has 1825 Blast hits to 1814 proteins in 439 species: Archae - 2; Bacteria - 918; Metazoa - 149; Fungi - 0; Plants - 715; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR