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15-2694-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7758638 [Map]; Strand: w
      • AT1G22020.1 - [+] show detail - serine hydroxymethyltransferase 6
        Distance: 1255; Region: intergenic
      • AT1G22030.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST...
        Distance: 526; Region: intergenic
    Flanking Genome Sequence: 15-2694-1 - 5-prime edge 
    CTCCTATGTG AATCAAATCA AATCAATTCT CCAGTTTTGA TCATTGGCTA 
    TTTTCAATTT ACTTTTCTTC TCCAACTATC TCAAAGAGAC AACAAGCACT 
    CCATTTTGAC CAAATGCNTT TCTCTTTATT TAAGTTGTGA TAGTAGTCTA 
    ATGATATAGT ACTATTAGAT GAAGGTGTAT GATCAATTTT TTTTTCCAAT 
    AAACTTTCGC TNGATTATCG CCATTTTGAT TAGTTTTAGT TTCGGCCTTA 
    AGCCTACCGA CGACAAATCT AATATTTACC GATTAATTCA TAAAAAAATC 
    GTATAAACAC TGCTCACNAA AATTCTGTTA CATGANCTTT CTAAAATCGT 
    CTAATCTAAT TTAATCCATC TTAAATCGTC TAAANGNGTC CTAATATCGN 
    CTNGCACATT TNGAACATCT CACCANCTAA TATAANATAA NGNGTTATTT 
    CTATANCCAA AACACATACA TTTGAACTAC NNGGTCNGGA AATCTTTCCN 
    NAAAAAAAAC ATNTTCCNAC GGGNGGGAGN NCCNAANCNN GAANNNGNAA 
    AATNNNCNTT TNGNTTTGAT TGNGNGAAAA NNNCCNTNNT GGANGNNAGT 
    NNNNNNNNNA NGNNNNNNAN NGNNGGNGGN NAAAANNNNA NNNNAAANNG 
    TNTTTNNTTN NCNNNGNNNA NANNGANNNN AAGGNNNNNC NNGGNNATNA 
    CNNNGCNNNG GNCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7758522 [Map]; Strand: w
      • AT1G22020.1 - [+] show detail - serine hydroxymethyltransferase 6
        Distance: 1139; Region: intergenic
      • AT1G22030.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST...
        Distance: 642; Region: intergenic
    Flanking Genome Sequence: 15-2694-1 - 3-prime edge 
    CATAGGAGGA GGTCAAGAGA GATATTAATT TGAAAATGGT GAATTTTGTG 
    GTGTTAATCA ATAATAATGA TGAAAATGGA TC

AT1G22020.1

Model type
Protein coding
Short Description
serine hydroxymethyltransferase 6
Curator Summary
Encodes a putative serine hydroxymethyltransferase.
Computational Description
serine hydroxymethyltransferase 6 (SHM6); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: glycine metabolic process, L-serine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 7 (TAIR:AT1G36370.1); Has 11545 Blast hits to 11518 proteins in 2846 species: Archae - 258; Bacteria - 6402; Metazoa - 340; Fungi - 287; Plants - 348; Viruses - 6; Other Eukaryotes - 3904 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22030.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR