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15-3202-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2322034 [Map]; Strand: w
      • AT1G07540.1 - [+] show detail - TRF-like 2
        Distance: -986; Region: promoter
    Flanking Genome Sequence: 15-3202-1 - 3-prime edge 
    CTTANGTCTA NGTTNANGTA TNNAGCCTCA GATNATTNAT AGGGCTCTCA 
    ANGAANNCAT NNNNGTTATT ATGNAACTNA CACATNGNNN ANCGAAANAC 
    NGNNNANGAC ATAATAAAAT AAACAGGAGA ATGACATGGC TTGGACTTGA 
    AAGGAAAAAA AAAANCATTN CNNGGCNTGT NTNACTCANC GTTNTTGNCA 
    AAGTTNGGGT GTNGTAAAAA AANCCGGACA ATCCCCCNNA ANCAACNCNN 
    GGCCNANTCA GGGGGAANTC CNTNAAACNG NGGGGGGGNC CCAAAANGGG 
    ANAAAAAAAN CNGGNNTTCN GGGGGGGGTT TACGGGNANT ACCCGGTNAT 
    TCNCCCTTTT TCTTTTTTAN AACCCNTCCT TNGGGTTCCT NCNCCTCNCN 
    NAAAACCNGG GGTTTAACCC CTNGNTTCCN TTCCGGGCTT TTTCCCCCCN 
    TTNNGGGGTT CTTNNNTTCC CGCNNCCNNA ATANANCTNN CGNNACCNAC 
    CCNTTNTTNT CTTTGNTGCG GGTTNNNGNA NCAANNNTCN CGCCTTCNNA 
    TGTNCNANAN CCTNCCCTTT TTCTTNNCAG ANAACGGGCG ANTNNGTTTN 
    TCNNGNGCCT TTNCTGGNCT CTGNGNNNTN CNNATCGCAG NCCNTNTNTN 
    GCCACNCATC GCCCTCNCCT NCGNGCTCGA TNCNTNTCCC ACCNTGGTNN 
    TNATNACNGA CANNTCCACC GCNNTTNNNT TTCCNTNCCA NGTCNCNTCC 
    CAGACTAAAN GTNCCCNTCG TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2322144 [Map]; Strand: w
      • AT1G07540.1 - [+] show detail - TRF-like 2
        Distance: -1096; Region: intergenic
      • AT1G07550.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 509; Region: intergenic
    Flanking Genome Sequence: 15-3202-1 - 5-prime edge 
    GGNCNANCAA CCNTNCCGGA GANANCACTN CNNGNGGNTG NGCANGANCG 
    GATCGGNNAN NCNTCNAANA TACTTGGGCN TNANGTGAAC CGAACGGTTC 
    GTTCAGTTCT TTCCCAACCT GCCGAGAATC CGAATTGAAT AGTCCTTCTA 
    AATGCTGGAA ACTTTGAACG GAACGATGGA TCTGAGAGTA AATACCGAAG 
    TGAAGCTCGT CTTCTTCTTC TTCTTCTCTG TCGGTAGCAT CGAAATCGCG 
    AAGGACAAAG AACACGTGTN TCAAGAAGAT GAAATTAGGA TTNCTTCTTG 
    GGCTTACAAA GTGCCTACAG CCCAAAAAAT AACATTNCTA CANCACAGAC 
    TANACTTTNN GTNCACANAA TAAAAACCNA GNNGAATATC NAAGNCNCNC 
    CNAAAAANCN NGAACCGNAT ANACNGATNC TTCAAGNCGG ANTNAAATGN 
    CNNAATTNCC TGGANCGAGN NGGATATTCC TNNNTGGGNT GATNAANAAC 
    ATGNCGTGNG GACGTNTTTG TNNGCCNNAC GAANGAAGNC NNNGNGANGN 
    NTTCAGCNTC GTTCGAGNNG NCCGANNTTA ANACNNAAAN TTGGNGNAAN 
    TTGCAGNCCC NNGCNCANAG NANNNNATNT CANGTNGNGG ANNTACTNTG 
    CCCNNNNACG NNNANNNANT NANTNGGGTN ACGTGGCCCN CGGNGGGNNN 
    ATNTNGGNGG NCNGTNCANG NTATGCATAT TNNCCGGGNN GAGNCGCATA 
    NNGANCCGNC NNATCNGATN NAAN

AT1G07540.1

Model type
Protein coding
Short Description
TRF-like 2
Curator Summary
Arabidopsis thaliana telomere-binding protein, putative (At1g07540)
Computational Description
TRF-like 2 (TRFL2); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 1 (TAIR:AT3G46590.2); Has 350 Blast hits to 338 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 309; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07550.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root, leaf; EXPRESSED DURING: LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G14510.1); Has 160053 Blast hits to 116886 proteins in 4275 species: Archae - 103; Bacteria - 12717; Metazoa - 42496; Fungi - 9017; Plants - 77350; Viruses - 370; Other Eukaryotes - 18000 (source: NCBI BLink).
Link
InterPro Scan - TAIR