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15-3293-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20686284 [Map]; Strand: c
      • AT3G55730.1 - [+] show detail - myb domain protein 109
        Distance: -2231; Region: intergenic
      • AT3G55734.1 - [+] show detail - MIR393B; miRNA
        Distance: -5363; Region: intergenic
    Flanking Genome Sequence: 15-3293-1 - 5-prime edge 
    NGTTCAAGTC CTACGCACCA GCGNAAGACG TCTTTCTCTT TTTTCCTTTT 
    TTCTTGTTTT TAACTTGACT TCTTCTTCGT TCACCAAACT CTCTTTTCTC 
    ACCAAACTCT CTTTTCTCAC AACACAACAT AAGCAACAAA TTCGGATTGG 
    AAAACAAATC CAATTTGAAT TTTAATAAAT TCCAATTTGG ATACAAATCT 
    TAAACATGTA TCTACAGAGA AGAAAGTAAA AGCCCTACAA ATATCAAATC 
    AAATCTCAAA ATCTACACAT AAGTTTCTCG TCGAGGTTAT GCATAGAAAA 
    AGTTTTCAGA TCTGGTGGTT GAGAATACCC GTTGCTCTGC CATCTCCGTC 
    GTCCTCTCCA CCACCACCAC CTCCATTCTT CCTTCTTCAA TTAAATTAAG 
    ACAAAAAAGA AAGAAAAAAC GTCAAAAAGT ATACTGTTGG GTTCGAACCC 
    GGATATGGAT GAAATTTCAC CCCACTTCTT GGGTAAGACA ATTAATTCGT 
    GAGATAGTTA TTAGAGATTG AATATATATG AGGAAATACC GAGAGTTATT 
    GCAGTTAGTA GTTCCGTTAC CAATACTAAC AGTCGTTAAC TCGGGCGCAA 
    AAAATATCTA ATATTTAAAA GACCAGGGTT TTAGTAGACA ATCAAAATTA 
    ACCTTATGTN TTTTTCTTCC AATTTTAAAA GTATAGGNAT TAAACGGCCA 
    AATAAAAATA ATGANGGGTT TTTN

AT3G55730.1

Model type
Protein coding
Short Description
myb domain protein 109
Curator Summary
putative transcription factor MYB109 (MYB109) mRNA,
Computational Description
myb domain protein 109 (MYB109); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 25 (TAIR:AT2G39880.1); Has 8907 Blast hits to 7929 proteins in 513 species: Archae - 0; Bacteria - 2; Metazoa - 870; Fungi - 593; Plants - 5452; Viruses - 6; Other Eukaryotes - 1984 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55734.1

Model type
miRNA
Short Description
MIR393B; miRNA
Curator Summary
Encodes a microRNA that targets several TIR1/AFB family members and one bHLH family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCCAAAGGGAUCGCAUUGAUCC. Targets are: F-box proteins and bHLH transcription factor. Specifically cleaves AFB3 transcripts, controlling AFB3 mRNA accumulation in roots in response to nitrate exposure.
Link
InterPro Scan - TAIR