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15-3304-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7549331 [Map]; Strand: c
      • AT1G21540.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-3304-1 - 5-prime edge 
    GTTGGNNGGG NGGGGNANNA GGNGGAANAA GAANGANNGG GCGGANACAN 
    CCANGAGCCG GANNGCGNNC AANAGAANCN AGAATCANNN NGGNGGGCNN 
    ACTACAGGGG NNGGACGANG GGGAGAAGGA AGAGAACGGG GNNGAAGGGG 
    GCAGAGACNG ACAANGAGCC GAACNAAAGG CANGTCAGGA TNANAGCGNG 
    AGNNACTAAA ACAAANCNTG AAGGAACCGC NGCGCGTATG ANAGAGGANG 
    GATGGNGCTA CANCGGAGAC GNANGAGTTA TACATGAAGA CGGANACTNG 
    GAAGNNAAAG ACCGGNNAAA GGANGNGANC ATATGCGGAG GAGAGAACAN 
    AAGNAGNGCC GAGGNNGAAA CNGNNCTGNA NACAAANGCA GNAGGNNGAA 
    NGAAGCCGCA NGNGGGNGGC TNANANCGGA NAAGAGGNNG GGGAGAGANA 
    NCGGNGNGCN CNNNGGGAGN NNGAANNNNN NANNGGGANN GGAAANGGGG 
    NAGNNNACNN NANACGCGNN AGNAAGGNGN NNNGGNANGA NNAGGNNNAN 
    GANNGAGGGA NNGAGGNCGG GAAGGCGNCN NACNNNNGNN AAGGGNGGNN 
    NAGNGNNNGC NGGCGGNGNG GANGGNGGNG NGNNGGNCNN GNGNAGGGCG 
    NAGNNNGNNN GNGNNGAACN ANAGCGNGAA GNAGANAGAN NNGANAGGNA 
    NAGCGNGACA CNNGGAGNNG GNGGGGAAAA ACGGGGGNGG NNANNNAGAN 
    G

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7549438 [Map]; Strand: c
      • AT1G21540.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-3304-1 - 3-prime edge 
    CTTGNNACAN CCGGGCCTCN GGTTGNCGTT CANCCGTACC NCTGACCNAN 
    GTTGATACTT AGGGTTTNTG CTCTTGAGAT GATGGTTGCT GGAGGTGGAG 
    CTCCGGCGGT CATAACCTGA TTTCAGAAAC NCAAAACAGA GTTTATCCAA 
    AAGTNCACCA NATGATTTTC AAATGGAAGT TTTTAATAAA CCAAACCGGT 
    ATTGAACATG GATGTATTTA ATTATACCTG AACCGGGTTC TTTAGCGGTT 
    TACGAGACGG GTAGTTGGTT AGCATGTTGA GAACCATTGG TGCGGCACAC 
    ATGTGAGTTA CGTGATGCTT ATCGATCAAG TCATAGATAG TCGGCGCGTC 
    GACTCTACGG GTGCAGACGT TGGTGGCTCC AACCGCCGCA GTGCCCCATG 
    TATACCCCCA ACCATTGGCG TGGAACATTG GTAGAGTCCA CAAGAATAAC 
    CGGCCTGTTC GGAAAATGCC AGTCAAGCAA TGAGCTTACG GTTAGCATGA 
    AAATTGCTCT GTGGCTCAAC ACTACTCCTT TGGGAGATGA CGTTGTTCCA 
    NAAGTATAGT TGAGAATCAT AGGCTGCCAC TCGGNTTTGA GGACGGATC

AT1G21540.1

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Computational Description
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21530.2); Has 76629 Blast hits to 70171 proteins in 3593 species: Archae - 1132; Bacteria - 50179; Metazoa - 3309; Fungi - 3660; Plants - 2281; Viruses - 1; Other Eukaryotes - 16067 (source: NCBI BLink).
Link
InterPro Scan - TAIR