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15-3442-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30237886 [Map]; Strand: w
      • AT1G80420.4 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -115; Region: promoter
      • AT1G80420.1 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -170; Region: promoter
      • AT1G80420.2 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: 0; Region: intron1 (5UTR)
      • AT1G80420.3 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -158; Region: promoter
    Flanking Genome Sequence: 15-3442-1 - 5-prime edge 
    CTAGAAATCA TGTGGGCTTT GCCCGCGCAG GTTCGAATCC TGCCGTTCAC 
    GCTTTTTTTT ACCAATTTTT TGCTTTGACT CTTTCATTCG CGTTTTACTC 
    TTCTGCCCTT TTTTCTTTTT TTTTGGACAT NAACTTGTTC TGCCCTTTTA 
    GGATTTCTAA TGTTTCATTT TTACCCTGGA GGGGGTTTAT GAATTAAAAN 
    AAGTACAAAA CCAAGGTCAA ATTACCATTA CTAAATCATT CCTCGTTTCA 
    ATCTTTTTTT CCTAAGTTAG CTNANNCAAA TCCTTCGTAT ACCTACAATG 
    AGCTCGATNA ATTAAACTTA ATGCNCTGGA AAAGCTAAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30237770 [Map]; Strand: w
      • AT1G80420.4 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G80420.1 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -54; Region: promoter
      • AT1G80420.2 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: 0; Region: intron1 (5UTR)
      • AT1G80420.3 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -42; Region: promoter
      • AT1G80430.1 - [+] show detail - pre-tRNA
        Distance: -14; Region: promoter
    Flanking Genome Sequence: 15-3442-1 - 3-prime edge 
    ATTTCTAGTC ATGCCCGATA ACCACTCCGG CACGTCCACC TTTGCTAGTT 
    GAATCATTTG TTAAATTGAA AACCCGTCAT TTTGATCTGA TTTTGTACTG 
    TATGTTGACA AATTGAATAG TCTCTGATGA TTTCGATCAA AGAGAAGCCA 
    CNGGGGGGAG CNGGTAGCAC TTAAAGGTTC CTCGCTTTCT TCTCAAGTTT 
    ATAGTCTTCT CCTCTGTGTT GGCTCATTTA CATGGGTAGA TTTAGTTTTC 
    GAGGGTTTTA TGGCGAAGTT CGCGATGTTC TGTTAATTGC AATGTCTTTC 
    TTCTTTTTTT TTTTTTTTTT TTNGGGGGTN AAAACCCNAT TTNCCNGGGG 
    GNTTTNNTTN NAACCNAANN NNNCCCCCNG GGNNGGNANN CCCCCNNNNC 
    NTTAAA

AT1G80420.1

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80420.2

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80420.3

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80420.4

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357).
Link
InterPro Scan - TAIR

AT1G80430.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ser (anticodon: AGA)
Link
InterPro Scan - TAIR