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15-3590-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11424603 [Map]; Strand: w
      • AT1G31835.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -919; Region: promoter
      • AT1G31840.2 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G31840.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-3590-1 - 3-prime edge 
    CNCGGAGGNA TGCNAGCNGN GGATTAGTAC TGAGATCAGC CANATTTTGA 
    TCCCANNCTG GAANTACCAC CNCGGNCCNA CNACCANGCN TNCNNTATAA 
    GACCTGCCNG ACNANGGCCG GNCCANTATG CCNANGATTG CACATATATC 
    TNCAGAGCCT TATNAACCAT ACCATATCTA CAACAACATT CCATCAAAAA 
    CTNGCAAACA TCAGCATCCA ATGACCTATC CCTAATCGAA CCCAGAACGT 
    TGAAATCCTT CCCACGATTG GTGATCATTT NATCGAACAC CTTATCTGCA 
    ACATCGAACA TCCCATTTCG GATCAAAACA TGAGCAATGG TATAGAAAGA 
    AGGATC

AT1G31835.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G31840.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1); Has 68904 Blast hits to 14697 proteins in 297 species: Archae - 6; Bacteria - 66; Metazoa - 698; Fungi - 1025; Plants - 65043; Viruses - 0; Other Eukaryotes - 2066 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G31840.2

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1).
Link
InterPro Scan - TAIR