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15-3662-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5448285 [Map]; Strand: c
      • AT1G15820.1 - [+] show detail - light harvesting complex photosystem II subunit 6
        Distance: -426; Region: promoter
      • AT1G15825.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G15830.1 - [+] show detail - unknown protein; Has 165982 Blast hits to 57214 proteins in 2459 species: Arc...
        Distance: -441; Region: promoter
    Flanking Genome Sequence: 15-3662-1 - 3-prime edge 
    ACCGGAAACG GATTATACNG NANTNACTGG NATGGACTCT ATTGGCGGNG 
    CNAATGACTA CACCGGCGGT TGCCATGGAT TTGTGACCTC TGGCGGNGTG 
    GTAAAGTCNG GATTTTGGGG TGGGAAATCT CCGAGGACTG GTGGTGTGGA 
    GAATACTGGA ATTGTCGGNG GATCTTGTAC GGTCGGTGGT AATGTGAAAA 
    CCGGCGGGAT CTCTTGAACC GGTGGAGGCA AAATCGGCGG GAACTCTTCA 
    GCCGGTGGAG TGAGAATTGG CGGGAAATAT TGAACCGGTG GAGGCATAAT 
    CGGAGGGAAT T

AT1G15820.1

Model type
Protein coding
Short Description
light harvesting complex photosystem II subunit 6
Curator Summary
Lhcb6 protein (Lhcb6), light harvesting complex of photosystem II.
Computational Description
light harvesting complex photosystem II subunit 6 (LHCB6); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, nonphotochemical quenching; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 6 (TAIR:AT1G19150.1); Has 2316 Blast hits to 2191 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1959; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15825.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; Has 11879 Blast hits to 5508 proteins in 628 species: Archae - 56; Bacteria - 1752; Metazoa - 3397; Fungi - 734; Plants - 3913; Viruses - 567; Other Eukaryotes - 1460 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15830.1

Model type
Protein coding
Computational Description
unknown protein; Has 165982 Blast hits to 57214 proteins in 2459 species: Archae - 263; Bacteria - 44622; Metazoa - 55751; Fungi - 10656; Plants - 17613; Viruses - 2527; Other Eukaryotes - 34550 (source: NCBI BLink).
Link
InterPro Scan - TAIR