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15-3732-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7235599 [Map]; Strand: c
      • AT1G20816.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 471; Region: intergenic
      • AT1G20823.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -3201; Region: intergenic
    Flanking Genome Sequence: 15-3732-1 - 5-prime edge 
    ATNATANAAN CNNANCNNGC NNTCAACCAC GCTNNNCCGN TNCATTGCNA 
    TTATACTGCT GATATTGAAA ATTAATGGTT GATTCTTGGT CGTTGTGGGG 
    TTTTATGCAA GATCTTTGAT TCATGACCAC CAGAAGCAAA TCTTTATAGA 
    ACAAGATCTT CCTTCACATG TGTATGTGGG ACTAAATTGT TGATTTGATA 
    CTGATGGTGA TGTTCAAGGC TCATATTAGT AGCATCACGA TCTCAAAGTC 
    AACCAGAACC GTAACACAGA CCAAACTAAT GTATGCCGAT CTGAGATGAC 
    CGGACTTCTG ATGTTTGGTT TGTGAACTAT CACACCAATT GCATCCAAAT 
    TGGCACATAC AAGTGAGGGT TTGCTTCAGA TTGGTTTAGT ATGTATTTTC 
    CGGTTATCTA TAACAGTATC ACAAAGAAAA GGAGGTCTCT AAAGGAACCC 
    AAATGGGGTT TAAGACCACG CATAAAGNCA AACCTAGTTA GATACGGATT 
    CTATCTTTAG ACAAGGAAAT AATAGCTATC TGAGCCTAGG AGACNAAAGC 
    NANTTANCTC TTAGATGCTN GCNAGAGTAA AAGTGACTGA TGATGACAGA 
    AAGATCTCTG AANTTTGCCT NTCNNCTGGT AAANTCAANA CNGAGTNTTT 
    TTTCTATNAG NAAATACATT TTCTNANCCT NNTACGANNN TGANAATGCG 
    GATTTCACNC CTCCTNTGNT CCGAACCTGN NTNACT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7235711 [Map]; Strand: c
      • AT1G20816.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 583; Region: intergenic
      • AT1G20823.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -3089; Region: intergenic
    Flanking Genome Sequence: 15-3732-1 - 3-prime edge 
    GTTGTTGGTG GTTTTAGCTA ACTAAACACC ACGTGACATC TATGCATATT 
    AAGTCCCAAA CAACGTTTAG TAGAGGCGGC TTTAAATTCC AACATAATAG 
    GGTCTCTATT ATCTTTTTTT TATAATTATT TAATCTCTGG ATAATTTCAT 
    TAACAAACAA TAATTTGACT TAGATTGTGA AATACTCGAA GACCAATTTG 
    AAAAGTTAGA CAATTGACAC TGGAAATTGC TAAAGTCATT GTCGTAAAAC 
    CGCGAATGTG GCTTAGAGCA ATTTCGTGCC CACAAATTGG TTGAATTTGG 
    TCAATTGCAA TACATTTTCC TCGAGGCTGC ATACTTTTTC AAACTCGCAA 
    TAAATTAATT AGTGGAGGAA CGAAGTTTCC TCATCGCTTT GACTATTTAT 
    ACGCTAGTCA TGCTAGATGA TTATAGACTT ACACATAATT ATTTAGTATA 
    TTGTCTGAAA AAGGGTTTGT ATAGTGACAT GTTTTAGATG TGATCTTCGT 
    ATTAGTTGTC CCAAATTTAA TAAATTTAAC GAGAAAAATA GAGCATGTGG 
    GGAGAAGAAG AAGTGGGCGG TGCGAAATCA GAAAGTGGAG AGTGCACTGA 
    GGAGAGAAAG AGTCAAACAG AAAATTAATA CTCGTTTTTA ATTTTTCTCC 
    GACTTACTAT ATTTGGAAAC TCCTAATTTA CACGCTTTCT CTTCGTTTAC 
    TTATCTTAGG GAAGATTATN TNTAATATGG TAATTAGNTT

AT1G20816.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76405.2); Has 52 Blast hits to 52 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G20823.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G76410.1); Has 9063 Blast hits to 9039 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 637; Plants - 4964; Viruses - 26; Other Eukaryotes - 1095 (source: NCBI BLink).
Link
InterPro Scan - TAIR