1. Home
  2. Mutant Lines
  3. 15-3808-1

15-3808-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23544765 [Map]; Strand: c
      • AT5G58180.1 - [+] show detail - Synaptobrevin family protein
        Distance: 0; Region: intron4 (CDS)
      • AT5G58180.2 - [+] show detail - Synaptobrevin family protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 15-3808-1 - 5-prime edge 
    AACTTAATGG AGGGAACTGG TATGTATTGG AATGTAAAAA GGAAGCAAAG 
    CATGCAGGTC AACAATCAAG AACCAGGGAC GGCACTTACA AGGATAATCT 
    TGGTCTCATC CAATTCCCTC TGGATTTTCA ACAGCTTATC AGCTTCTGCC 
    GGGTCCTGAA GATATTCCAA AAAAAAGTAA GAATAATTGA CACAGCATAT 
    AGTTCCTAAA GTCTTAAACA AGATTCATAG ATACAAAAAA GTTAGTGCTT 
    CTAGAACCCG AAATTTGTCT GAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26815911 [Map]; Strand: w
      • AT5G67200.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-3808-1 - 3-prime edge 
    CCGGTAACAA CCTCACCGGA GTAATCCCCG TTACTCCGAC TCTATCACGT 
    TTCGATGCGT CGTCGTTTAG GTCTAACCCT GGACTCTGCG GCGAGATCAT 
    TAACCGAGCT TGCGCTTCAC GCTCGCCGTT CTTTGGCTCC ACTAACAAAA 
    CGACGTCGTC AGAAGCTCCG TTAGGACAAA GCGCACAGGC GCAGAATGGT 
    GGTGCGGTGG TTATCCCTCC GGTAGTTACG AAGAAGAAAG GTAAAGAAAG 
    TGGATTAGTC CTTGGTTTCA CCGCTGGTCT CGCTTCGCTT ATAGTTCTTG 
    GTCTTTGCCT CGTTGTGTTC TCTCTGGTGA TAAAGAAACG AAACAACGAT 
    GGAATATATG AACCAAATCC AAAAGGAGAA GCT

AT5G58180.1

Model type
Protein coding
Short Description
Synaptobrevin family protein
Curator Summary
member of YKT6 Gene Family
Computational Description
ATYKT62; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G58060.1); Has 1250 Blast hits to 1250 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 351; Fungi - 294; Plants - 343; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58180.2

Model type
Protein coding
Short Description
Synaptobrevin family protein
Curator Summary
member of YKT6 Gene Family
Computational Description
ATYKT62; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G58060.1).
Link
InterPro Scan - TAIR

AT5G67200.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G50230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR